myRT

myRT report for GCA_000327045.1_ASM32704v1

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Seq: CP003051.1 Thioflavicoccus mobilis 8321, complete genome (4048921 bp)
Overview 1 RT 1: 353041-357487 bp 2 RT 2: 490431-498257 bp 3 RT 3: 1087349-1097594 bp 4 RT 4: 1840816-1847506 bp 5 RT 5: 3169567-3174793 bp Neighborhood of RT #1 [353041, 357588] Cas2_I_II_III Cas_Cas1 RVT-CRISPR RAYT Neighborhood of RT #2 [490431, 498257] PRK11070 DUF2442 RVT-GII CytC553 CytC553 CytC Neighborhood of RT #3 [1087349, 1097620] Beta4Glucosyltransferase DUF4962 RVT-GII GIIM RVT-GII PHA02517 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like MviM Neighborhood of RT #4 [1840816, 1847506] DEDD_Tnp_IS110 Transposase_20 RVT-GII HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #5 [3169567, 3174810] Avd_like RAYT RVT-DGRs TIR_2 pfam13191 pfam03781 ksgA Feature: gene Location: 353041-353382 bp Feature: domain Description: Cas2_I_II_III Location: 353059-353251 bp Feature: domain Description: Cas2_I_II_III Location: 353059-353251 bp Feature: gene Location: 353379-354377 bp Feature: domain Description: Cas_Cas1 Location: 353388-354240 bp Feature: domain Description: Cas_Cas1 Location: 353388-354240 bp Feature: gene Location: 354374-355213 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 354584-355184 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 354584-3551 84 bp Feature: gene Location: 356942-357613 bp Feature: gene Location: 357190-357588 bp Feature: domain Description: RAYT Location: 357196-357487 bp Feature: domain Description: RAYT Location: 3571 96-357487 bp Feature: gene Location: 490431-492233 bp Feature: domain Description: PRK11070 Location: 490479-492180 bp Feature: domain Description: PRK1 1 070 Location: 490479-4921 80 bp Feature: gene Location: 492848-493093 bp Feature: domain Description: DUF2442 Location: 492857-493067 bp Feature: domain Description: DUF2442 Location: 492857-493067 bp Feature: gene Location: 493848-495173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494106-494796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4941 06-494796 bp Feature: gene Location: 496175-497803 bp Feature: domain Description: CytC553 Location: 496214-496559 bp Feature: domain Description: CytC553 Location: 49621 4-496559 bp Feature: domain Description: CytC553 Location: 496586-496814 bp Feature: domain Description: CytC553 Location: 496586-49681 4 bp Feature: domain Description: CytC Location: 496964-497729 bp Feature: domain Description: CytC Location: 496964-497729 bp Feature: gene Location: 498111-498257 bp Feature: gene Location: 1087349-1087972 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1087358-1087844 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1 087358-1 087844 bp Feature: gene Location: 1088719-1092639 bp Feature: domain Description: DUF4962 Location: 1090381-1090996 bp Feature: domain Description: DUF4962 Location: 1 090381 -1 090996 bp Feature: gene Location: 1092835-1093632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092838-1093144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 092838-1 0931 44 bp Feature: domain Description: GIIM Note: maturase Location: 1093198-1093429 bp Feature: domain Description: GIIM Note: maturase Location: 1 0931 98-1 093429 bp Feature: gene Location: 1093648-1094037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093738-1094014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 093738-1 09401 4 bp Feature: gene Location: 1094449-1095282 bp Feature: domain Description: PHA02517 Location: 1094476-1095256 bp Feature: domain Description: PHA0251 7 Location: 1 094476-1 095256 bp Feature: gene Location: 1095491-1097620 bp Feature: domain Description: 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like Location: 1095692-1096586 bp Feature: domain Description: 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like Location: 1 095692-1 096586 bp Feature: domain Description: MviM Location: 1096685-1097594 bp Feature: domain Description: MviM Location: 1 096685-1 097594 bp Feature: gene Location: 1840816-1841163 bp Feature: gene Location: 1842241-1843479 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1842271-1842766 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 842271 -1 842766 bp Feature: domain Description: Transposase_20 Location: 1843069-1843321 bp Feature: domain Description: Transposase_20 Location: 1 843069-1 843321 bp Feature: gene Location: 1843426-1844352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1843813-1843975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 84381 3-1 843975 bp Feature: gene Location: 1846257-1846697 bp Feature: domain Description: HTH_Tnp_1 Location: 1846263-1846422 bp Feature: domain Description: HTH_Tnp_1 Location: 1 846263-1 846422 bp Feature: domain Description: HTH_Tnp_1 Location: 1846437-1846587 bp Feature: domain Description: HTH_Tnp_1 Location: 1 846437-1 846587 bp Feature: gene Location: 1847057-1847506 bp Feature: gene Location: 3169567-3169704 bp Feature: domain Description: Avd_like Location: 3169609-3169693 bp Feature: domain Description: Avd_like Location: 31 69609-31 69693 bp Feature: gene Location: 3169728-3170258 bp Feature: domain Description: RAYT Location: 3169731-3170169 bp Feature: domain Description: RAYT Location: 31 69731 -31 701 69 bp Feature: gene Location: 3170261-3170737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3170315-3170489 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 7031 5-31 70489 bp Feature: gene Location: 3170891-3173578 bp Feature: domain Description: TIR_2 Location: 3170924-3171212 bp Feature: domain Description: TIR_2 Location: 31 70924-31 71 21 2 bp Feature: domain Description: pfam13191 Location: 3171416-3171824 bp Feature: domain Description: pfam1 31 91 Location: 31 71 41 6-31 71 824 bp Feature: domain Description: pfam03781 Location: 3172865-3173549 bp Feature: domain Description: pfam03781 Location: 31 72865-31 73549 bp Feature: gene Location: 3174022-3174810 bp Feature: domain Description: ksgA Location: 3174028-3174793 bp Feature: domain Description: ksgA Location: 31 74028-31 74793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, RAYT (COG1943), PRK11070 (single-stranded-DNA-specific exonuclease RecJ), DUF2442 (pfam10387), RVT-GII, CytC553 (COG2863), CytC (COG3258), Beta4Glucosyltransferase (cd02511)
DUF4962 (pfam16332), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like (cd08255), MviM (COG0673), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), HTH_Tnp_1 (pfam01527), Avd_like (cd16376), RVT-DGRs
TIR_2 (pfam13676), pfam13191 (AAA_16;AAA ATPase domain), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), ksgA (TIGR00755)

Seq: CP003052.1 Thioflavicoccus mobilis 8321 plasmid pTHIMO01, complete sequence (88600 bp)
Overview 1 RT 1: 67017-70564 bp Neighborhood of RT #1 [67017, 70564] TnpB_IS66 RVT-CRISPR-like GIIM Feature: gene Location: 67017-67379 bp Feature: domain Description: TnpB_IS66 Location: 67044-67332 bp Feature: domain Description: TnpB_IS66 Location: 67044-67332 bp Feature: gene Location: 67379-67681 bp Feature: gene Location: 67696-68994 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 67939-68584 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 67939-68584 bp Feature: domain Description: GIIM Note: maturase Location: 68788-68932 bp Feature: domain Description: GIIM Note: maturase Location: 68788-68932 bp Feature: gene Location: 69180-70118 bp Feature: gene Location: 70220-70564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-CRISPR, GIIM (pfam08388)