myRT

myRT report for GCA_000328545.1_ASM32854v1

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Seq: CP003066.1 Thermoanaerobacterium thermosaccharolyticum M0795, complete genome (2783395 bp)
Overview 1 RT 1: 439969-448492 bp 2 RT 2: 518690-523750 bp 3 RT 3: 977627-983555 bp 4 RT 4: 1507719-1513078 bp 5 RT 5: 2093304-2100876 bp 6 RT 6: 2245739-2251905 bp 7 RT 7: 2572102-2579652 bp Neighborhood of RT #1 [439969, 448500] YcjR COG3464 HTH_7 COG3464 RVT-GII GIIM RND_mfp AcrA RND_mfp EmrA RND_mfp LolD Neighborhood of RT #2 [518690, 523773] NadC YcaP RVT-GII GIIM YgaK MviM Neighborhood of RT #3 [977627, 983587] GalU RVT-GII GIIM predic_Ig_block SLH SLH SLH Neighborhood of RT #4 [1507719, 1513078] DUF3189 HflX RVT-GII GIIM Neighborhood of RT #5 [2093304, 2100914] PRK15415 BMC_PduA RVT-GII GIIM YesN YesN FGGY_D-XK_EcXK-like Neighborhood of RT #6 [2245739, 2251916] DUF1256 RVT-GII GIIM Germane Gmad2 HK_WalK HK_WalK Neighborhood of RT #7 [2572102, 2579654] SAPR Cu_amine_oxidN1 AmiC RVT-GII GIIM FAD_oxidored SalY Feature: gene Location: 439969-440874 bp Ori: AGB18166.1 Feature: domain Description: YcjR Location: 440212-440677 bp Feature: domain Description: YcjR Location: 44021 2-440677 bp Feature: gene Location: 442364-443653 bp Ori: AGB18167.1 Feature: domain Description: COG3464 Location: 442370-442697 bp Feature: domain Description: COG3464 Location: 442370-442697 bp Feature: domain Description: HTH_7 Location: 442883-442988 bp Feature: domain Description: HTH_7 Location: 442883-442988 bp Feature: domain Description: COG3464 Location: 443201-443627 bp Feature: domain Description: COG3464 Location: 443201 -443627 bp Feature: gene Location: 444162-445568 bp Ori: AGB18168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444510-445128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44451 0-4451 28 bp Feature: domain Description: GIIM Note: maturase Location: 445179-445395 bp Feature: domain Description: GIIM Note: maturase Location: 4451 79-445395 bp Feature: gene Location: 446048-447805 bp Ori: AGB18169.1 Feature: domain Description: RND_mfp Location: 446159-446408 bp Feature: domain Description: RND_mfp Location: 4461 59-446408 bp Feature: domain Description: AcrA Location: 446438-446525 bp Feature: domain Description: AcrA Location: 446438-446525 bp Feature: domain Description: RND_mfp Location: 446792-446933 bp Feature: domain Description: RND_mfp Location: 446792-446933 bp Feature: domain Description: EmrA Location: 446933-447062 bp Feature: domain Description: EmrA Location: 446933-447062 bp Feature: domain Description: RND_mfp Location: 447161-447659 bp Feature: domain Description: RND_mfp Location: 4471 61 -447659 bp Feature: gene Location: 447808-448500 bp Ori: AGB18170.1 Feature: domain Description: LolD Location: 447844-448492 bp Feature: domain Description: LolD Location: 447844-448492 bp Feature: gene Location: 518690-519520 bp Ori: AGB18236.1 Feature: domain Description: NadC Location: 518705-519512 bp Feature: domain Description: NadC Location: 51 8705-51 951 2 bp Feature: gene Location: 519596-520264 bp Ori: AGB18237.1 Feature: domain Description: YcaP Location: 519608-520259 bp Feature: domain Description: YcaP Location: 51 9608-520259 bp Feature: gene Location: 520709-522115 bp Ori: AGB18238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521057-521675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 057-521 675 bp Feature: domain Description: GIIM Note: maturase Location: 521726-521942 bp Feature: domain Description: GIIM Note: maturase Location: 521 726-521 942 bp Feature: gene Location: 522193-522357 bp Ori: AGB18239.1 Feature: domain Description: YgaK Location: 522196-522349 bp Feature: domain Description: YgaK Location: 5221 96-522349 bp Feature: gene Location: 522649-523773 bp Ori: AGB18240.1 Feature: domain Description: MviM Location: 522658-523750 bp Feature: domain Description: MviM Location: 522658-523750 bp Feature: gene Location: 977627-978541 bp Ori: AGB18636.1 Feature: domain Description: GalU Location: 977630-978482 bp Feature: domain Description: GalU Location: 977630-978482 bp Feature: gene Location: 978610-978921 bp Feature: gene Location: 979122-980528 bp Ori: AGB18638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979470-980088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979470-980088 bp Feature: domain Description: GIIM Note: maturase Location: 980139-980355 bp Feature: domain Description: GIIM Note: maturase Location: 9801 39-980355 bp Feature: gene Location: 981047-981619 bp Ori: AGB18639.1 Feature: domain Description: predic_Ig_block Location: 981053-981434 bp Feature: domain Description: predic_Ig_block Location: 981 053-981 434 bp Feature: gene Location: 981680-983587 bp Ori: AGB18640.1 Feature: domain Description: SLH Location: 983036-983162 bp Feature: domain Description: SLH Location: 983036-9831 62 bp Feature: domain Description: SLH Location: 983213-983342 bp Feature: domain Description: SLH Location: 98321 3-983342 bp Feature: domain Description: SLH Location: 983426-983555 bp Feature: domain Description: SLH Location: 983426-983555 bp Feature: gene Location: 1507719-1508201 bp Ori: AGB19186.1 Feature: domain Description: DUF3189 Location: 1507725-1508163 bp Feature: domain Description: DUF31 89 Location: 1 507725-1 5081 63 bp Feature: gene Location: 1508191-1509429 bp Ori: AGB19187.1 Feature: domain Description: HflX Location: 1508218-1509412 bp Feature: domain Description: HflX Location: 1 50821 8-1 50941 2 bp Feature: gene Location: 1509806-1511212 bp Ori: AGB19188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1510154-1510772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 01 54-1 51 0772 bp Feature: domain Description: GIIM Note: maturase Location: 1510823-1511039 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 0823-1 51 1 039 bp Feature: gene Location: 1511665-1512168 bp Feature: gene Location: 1512212-1513078 bp Feature: gene Location: 2093304-2094116 bp Ori: AGB19713.1 Feature: domain Description: PRK15415 Location: 2093310-2094114 bp Feature: domain Description: PRK1 541 5 Location: 209331 0-20941 1 4 bp Feature: gene Location: 2094135-2094410 bp Ori: AGB19714.1 Feature: domain Description: BMC_PduA Location: 2094150-2094402 bp Feature: domain Description: BMC_PduA Location: 20941 50-2094402 bp Feature: gene Location: 2095698-2097104 bp Ori: AGB19715.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096046-2096664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2096046-2096664 bp Feature: domain Description: GIIM Note: maturase Location: 2096715-2096931 bp Feature: domain Description: GIIM Note: maturase Location: 209671 5-2096931 bp Feature: gene Location: 2097771-2098826 bp Ori: AGB19716.1 Feature: domain Description: YesN Location: 2097774-2098125 bp Feature: domain Description: YesN Location: 2097774-20981 25 bp Feature: domain Description: YesN Location: 2098167-2098818 bp Feature: domain Description: YesN Location: 20981 67-209881 8 bp Feature: gene Location: 2099385-2100914 bp Ori: AGB19717.1 Feature: domain Description: FGGY_D-XK_EcXK-like Location: 2099394-2100876 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 2099394-21 00876 bp Feature: gene Location: 2245739-2246416 bp Feature: gene Location: 2246491-2247024 bp Ori: AGB19855.1 Feature: domain Description: DUF1256 Location: 2246509-2246968 bp Feature: domain Description: DUF1 256 Location: 2246509-2246968 bp Feature: gene Location: 2247091-2248497 bp Ori: AGB19856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247439-2248057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247439-2248057 bp Feature: domain Description: GIIM Note: maturase Location: 2248108-2248324 bp Feature: domain Description: GIIM Note: maturase Location: 22481 08-2248324 bp Feature: gene Location: 2248965-2250419 bp Ori: AGB19857.1 Feature: domain Description: Germane Location: 2249106-2249430 bp Feature: domain Description: Germane Location: 22491 06-2249430 bp Feature: domain Description: Gmad2 Location: 2250123-2250381 bp Feature: domain Description: Gmad2 Location: 22501 23-2250381 bp Feature: gene Location: 2250522-2251916 bp Ori: AGB19858.1 Feature: domain Description: HK_WalK Location: 2250528-2251227 bp Feature: domain Description: HK_WalK Location: 2250528-2251 227 bp Feature: domain Description: HK_WalK Location: 2251227-2251905 bp Feature: domain Description: HK_WalK Location: 2251 227-2251 905 bp Feature: gene Location: 2572102-2572455 bp Ori: AGB20159.1 Feature: domain Description: SAPR Location: 2572111-2572432 bp Feature: domain Description: SAPR Location: 25721 1 1 -2572432 bp Feature: gene Location: 2572748-2574178 bp Ori: AGB20160.1 Feature: domain Description: Cu_amine_oxidN1 Location: 2572829-2573018 bp Feature: domain Description: Cu_amine_oxidN1 Location: 2572829-257301 8 bp Feature: domain Description: AmiC Location: 2573423-2574140 bp Feature: domain Description: AmiC Location: 2573423-25741 40 bp Feature: gene Location: 2574597-2576003 bp Ori: AGB20161.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2574945-2575563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2574945-2575563 bp Feature: domain Description: GIIM Note: maturase Location: 2575614-2575830 bp Feature: domain Description: GIIM Note: maturase Location: 257561 4-2575830 bp Feature: gene Location: 2576469-2578382 bp Ori: AGB20162.1 Feature: domain Description: FAD_oxidored Location: 2576667-2577912 bp Feature: domain Description: FAD_oxidored Location: 2576667-257791 2 bp Feature: gene Location: 2578482-2579654 bp Ori: AGB20163.1 Feature: domain Description: SalY Location: 2578536-2579652 bp Feature: domain Description: SalY Location: 2578536-2579652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), COG3464 (Transposase ), HTH_7 (pfam02796), RVT-GII, GIIM (pfam08388), RND_mfp (TIGR01730), AcrA (COG0845), EmrA (COG1566), LolD (COG1136), NadC (COG0157)
YcaP (COG2323), YgaK (COG1773), MviM (COG0673), GalU (COG1210), predic_Ig_block (TIGR04526), SLH (pfam00395), DUF3189 (pfam11385), HflX (COG2262), PRK15415 (propanediol utilization microcompartment protein PduB), BMC_PduA (cd07059)
YesN (COG4753), FGGY_D-XK_EcXK-like (cd07808), DUF1256 (pfam06866), Germane (smart00909), Gmad2 (pfam10648), HK_WalK (NF033092), SAPR (COG3947), Cu_amine_oxidN1 (pfam07833), AmiC (COG0860), FAD_oxidored (pfam12831)
SalY (COG0577)