myRT

myRT report for GCA_000330885.1_ASM33088v1

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Seq: CP004017.1 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence (549467 bp)
Overview 1 RT 1: 99530-104346 bp 2 RT 2: 364007-370540 bp 3 RT 3: 421435-439298 bp 4 RT 4: 517077-520584 bp Neighborhood of RT #1 [99530, 104438] RVT-GII GIIM HTH_29 HTH_33 DDE_3 Neighborhood of RT #2 [364007, 370605] YobN CccA RVT-GII GIIM AccC Neighborhood of RT #3 [421435, 439918] DUF4263 SLATT_5 RVT-UG17 HTH_29 rve HTH_XRE RVT-GII GIIM DUF2357 Neighborhood of RT #4 [517077, 520586] COG5489 RVT_N RVT-GII GIIM HU_IHF Feature: gene Location: 99530-99664 bp Feature: gene Location: 99825-100046 bp Feature: gene Location: 101084-102412 bp Ori: AGB73416.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101378-102035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 378-1 02035 bp Feature: domain Description: GIIM Note: maturase Location: 102104-102317 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 04-1 0231 7 bp Feature: gene Location: 103378-103926 bp Ori: AGB73417.1 Feature: domain Description: HTH_29 Location: 103471-103651 bp Feature: domain Description: HTH_29 Location: 1 03471 -1 03651 bp Feature: domain Description: HTH_33 Location: 103705-103873 bp Feature: domain Description: HTH_33 Location: 1 03705-1 03873 bp Feature: gene Location: 103884-104438 bp Ori: AGB73418.1 Feature: domain Description: DDE_3 Location: 103932-104346 bp Feature: domain Description: DDE_3 Location: 1 03932-1 04346 bp Feature: gene Location: 364007-365608 bp Ori: AGB73646.1 Gene: iaaM Feature: domain Description: YobN Location: 364163-365597 bp Feature: domain Description: YobN Location: 3641 63-365597 bp Feature: gene Location: 365642-366043 bp Ori: AGB73647.1 Feature: domain Description: CccA Location: 365750-366041 bp Feature: domain Description: CccA Location: 365750-366041 bp Feature: gene Location: 367548-368798 bp Ori: AGB73648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367764-368409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367764-368409 bp Feature: domain Description: GIIM Note: maturase Location: 368496-368706 bp Feature: domain Description: GIIM Note: maturase Location: 368496-368706 bp Feature: gene Location: 368850-369083 bp Feature: gene Location: 369316-370605 bp Ori: AGB73650.1 Feature: domain Description: AccC Location: 369334-370540 bp Feature: domain Description: AccC Location: 369334-370540 bp Feature: gene Location: 421435-421722 bp Ori: AGB73701.1 Feature: domain Description: DUF4263 Location: 421441-421687 bp Feature: domain Description: DUF4263 Location: 421 441 -421 687 bp Feature: gene Location: 422015-422593 bp Ori: AGB73702.1 Feature: domain Description: SLATT_5 Location: 422042-422576 bp Feature: domain Description: SLATT_5 Location: 422042-422576 bp Feature: gene Location: 422599-423915 bp Ori: AGB73703.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 422827-423409 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 422827-423409 bp Feature: gene Location: 424133-425554 bp Ori: AGB73704.1 Feature: domain Description: HTH_29 Location: 424175-424358 bp Feature: domain Description: HTH_29 Location: 4241 75-424358 bp Feature: domain Description: rve Location: 424559-424925 bp Feature: domain Description: rve Location: 424559-424925 bp Feature: gene Location: 425561-426298 bp Feature: gene Location: 427195-431265 bp Ori: AGB73707.1 Feature: domain Description: HTH_XRE Location: 427255-427393 bp Feature: domain Description: HTH_XRE Location: 427255-427393 bp Feature: gene Location: 431547-432545 bp Feature: gene Location: 433387-434715 bp Ori: AGB73709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433681-434338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433681 -434338 bp Feature: domain Description: GIIM Note: maturase Location: 434407-434620 bp Feature: domain Description: GIIM Note: maturase Location: 434407-434620 bp Feature: gene Location: 436062-438419 bp Feature: gene Location: 438416-439918 bp Ori: AGB73711.1 Feature: domain Description: DUF2357 Location: 438881-439298 bp Feature: domain Description: DUF2357 Location: 438881 -439298 bp Feature: gene Location: 517077-517694 bp Feature: gene Location: 517694-518002 bp Ori: AGB73780.1 Feature: domain Description: COG5489 Location: 517697-518000 bp Feature: domain Description: COG5489 Location: 51 7697-51 8000 bp Feature: gene Location: 518288-519808 bp Ori: AGB73781.1 Feature: domain Description: RVT_N Location: 518339-518567 bp Feature: domain Description: RVT_N Location: 51 8339-51 8567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518627-519266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 8627-51 9266 bp Feature: domain Description: GIIM Note: maturase Location: 519323-519551 bp Feature: domain Description: GIIM Note: maturase Location: 51 9323-51 9551 bp Feature: gene Location: 520064-520204 bp Feature: gene Location: 520416-520586 bp Ori: AGB73783.1 Feature: domain Description: HU_IHF Location: 520431-520584 bp Feature: domain Description: HU_IHF Location: 520431 -520584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), YobN (COG1231), CccA (COG2010), AccC (COG0439), DUF4263 (pfam14082), SLATT_5 (pfam18160)
RVT-UG17, rve (pfam00665), HTH_XRE (smart00530), DUF2357 (pfam09823), COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT_N (pfam13655), HU_IHF (cl00257)