myRT

myRT report for GCA_000334875.3_ASM33487v3

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Seq: CP032531.1 Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence (119712 bp)
Overview 1 RT 1: 68052-76481 bp Neighborhood of RT #1 [68052, 76498] gerPA MerR_1 DUF3967 RVT_N RVT-GII RVT-GII HNHc RVT-GII GIIM PRK13676 Feature: gene Location: 68052-68279 bp Ori: AYE53645.1 Feature: domain Description: gerPA Location: 68055-68265 bp Feature: domain Description: gerPA Location: 68055-68265 bp Feature: gene Location: 69143-69706 bp Ori: AYE53646.1 Feature: domain Description: MerR_1 Location: 69179-69338 bp Feature: domain Description: MerR_1 Location: 691 79-69338 bp Feature: domain Description: DUF3967 Location: 69569-69683 bp Feature: domain Description: DUF3967 Location: 69569-69683 bp Feature: gene Location: 70957-71538 bp Feature: domain Description: RVT_N Location: 71005-71251 bp Feature: domain Description: RVT_N Location: 71 005-71 251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71305-71539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 305-71 539 bp Feature: gene Location: 72241-74070 bp Ori: AYE53674.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72535-73234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72535-73234 bp Feature: domain Description: HNHc Note: nucleases Location: 73792-73930 bp Feature: domain Description: HNHc Note: nucleases Location: 73792-73930 bp Feature: gene Location: 74175-75239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74181-74598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 81 -74598 bp Feature: domain Description: GIIM Note: maturase Location: 74667-74898 bp Feature: domain Description: GIIM Note: maturase Location: 74667-74898 bp Feature: gene Location: 75271-75501 bp Feature: gene Location: 76142-76498 bp Ori: AYE53649.1 Feature: domain Description: PRK13676 Location: 76151-76481 bp Feature: domain Description: PRK1 3676 Location: 761 51 -76481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gerPA (pfam10676), MerR_1 (pfam13411), DUF3967 (pfam13152), RVT_N (pfam13655), RVT-GII, HNHc (smart00507), GIIM (pfam08388), PRK13676 (YlbF/YmcA family competence regulator)

Seq: CP032533.1 Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence (67346 bp)
Overview 1 RT 1: 45333-49822 bp Neighborhood of RT #1 [45333, 49845] DUF3885 RVT_N RVT-GII GIIM GRAM Gpos_tandem_5TM Feature: gene Location: 45333-45614 bp Feature: gene Location: 45641-46300 bp Ori: AYE53808.1 Feature: domain Description: DUF3885 Location: 46172-46283 bp Feature: domain Description: DUF3885 Location: 46172 -462 83 bp Feature: gene Location: 46486-48135 bp Ori: AYE53809.1 Gene: ltrA Feature: domain Description: RVT_N Location: 46534-46780 bp Feature: domain Description: RVT_N Location: 46534-46780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46834-47494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46834-47494 bp Feature: domain Description: GIIM Note: maturase Location: 47560-47794 bp Feature: domain Description: GIIM Note: maturase Location: 47560-47794 bp Feature: gene Location: 48809-49219 bp Ori: AYE53810.1 Feature: domain Description: GRAM Location: 48944-49064 bp Feature: domain Description: GRAM Location: 48944-49064 bp Feature: gene Location: 49420-49845 bp Ori: AYE53811.1 Feature: domain Description: Gpos_tandem_5TM Location: 49450-49822 bp Feature: domain Description: Gpos_tandem_5TM Location: 49450-4982 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3885 (pfam13021), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), GRAM (smart00568), Gpos_tandem_5TM (TIGR01218)

Seq: CP032527.2 Bacillus megaterium NCT-2 chromosome, complete genome (5193616 bp)
Overview 1 RT 1: 1602511-1609194 bp 2 RT 2: 1616453-1621649 bp 3 RT 3: 3354343-3359958 bp 4 RT 4: 3438481-3443827 bp Neighborhood of RT #1 [1602511, 1609235] MhpC SASP RVT_N RVT-GII GIIM SASP_gamma spore_ger_x_C Neighborhood of RT #2 [1616453, 1621657] DUF4284 RVT_N RVT-GII GIIM LysR MviM Neighborhood of RT #3 [3354343, 3359975] DUF3231 DUF3231 RVT_N RVT-GII GIIM SASP SASP Neighborhood of RT #4 [3438481, 3443838] PRK12335 AdoMet_MTases RVT_N RVT-GII GIIM MFS_MdfA_MDR_like Rve Feature: gene Location: 1602511-1603251 bp Ori: AYE50035.1 Feature: domain Description: MhpC Location: 1602541-1603240 bp Feature: domain Description: MhpC Location: 1602541-1603 240 bp Feature: gene Location: 1603547-1603777 bp Ori: AYE50036.1 Feature: domain Description: SASP Location: 1603577-1603739 bp Feature: domain Description: SASP Location: 1603 577-1603 73 9 bp Feature: gene Location: 1604236-1605885 bp Ori: AYE50037.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1604284-1604527 bp Feature: domain Description: RVT_N Location: 1604284-1604527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604584-1605244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604584-1605244 bp Feature: domain Description: GIIM Note: maturase Location: 1605310-1605544 bp Feature: domain Description: GIIM Note: maturase Location: 16053 10-1605544 bp Feature: gene Location: 1606878-1607078 bp Ori: AYE50038.1 Feature: domain Description: SASP_gamma Location: 1606932-1607070 bp Feature: domain Description: SASP_gamma Location: 160693 2-1607070 bp Feature: gene Location: 1608006-1609235 bp Ori: AYE50039.1 Feature: domain Description: spore_ger_x_C Location: 1608030-1609194 bp Feature: domain Description: spore_ger_x_C Location: 160803 0-1609194 bp Feature: gene Location: 1616453-1616830 bp Ori: AYE50045.1 Feature: domain Description: DUF4284 Location: 1616474-1616828 bp Feature: domain Description: DUF4284 Location: 1616474-1616828 bp Feature: gene Location: 1616823-1617062 bp Feature: gene Location: 1617707-1619356 bp Ori: AYE50047.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1617755-1618001 bp Feature: domain Description: RVT_N Location: 1617755-1618001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618055-1618715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618055-1618715 bp Feature: domain Description: GIIM Note: maturase Location: 1618781-1619015 bp Feature: domain Description: GIIM Note: maturase Location: 1618781-1619015 bp Feature: gene Location: 1619550-1620422 bp Ori: AYE50048.1 Feature: domain Description: LysR Location: 1619553-1620375 bp Feature: domain Description: LysR Location: 1619553 -16203 75 bp Feature: gene Location: 1620548-1621657 bp Ori: AYE50049.1 Feature: domain Description: MviM Location: 1620566-1621649 bp Feature: domain Description: MviM Location: 1620566-1621649 bp Feature: gene Location: 3354343-3354432 bp Feature: gene Location: 3354733-3355737 bp Ori: AYE51751.1 Feature: domain Description: DUF3231 Location: 3354742-3355198 bp Feature: domain Description: DUF3 23 1 Location: 3 3 54742-3 3 55198 bp Feature: domain Description: DUF3231 Location: 3355240-3355720 bp Feature: domain Description: DUF3 23 1 Location: 3 3 55240-3 3 55720 bp Feature: gene Location: 3356442-3358091 bp Gene: ltrA Feature: domain Description: RVT_N Location: 3356490-3356736 bp Feature: domain Description: RVT_N Location: 3 3 56490-3 3 5673 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356790-3357450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 56790-3 3 57450 bp Feature: domain Description: GIIM Note: maturase Location: 3357516-3357750 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 57516-3 3 57750 bp Feature: gene Location: 3359104-3359331 bp Ori: AYE51752.1 Feature: domain Description: SASP Location: 3359131-3359293 bp Feature: domain Description: SASP Location: 3 3 5913 1-3 3 59293 bp Feature: gene Location: 3359766-3359975 bp Ori: AYE51754.1 Feature: domain Description: SASP Location: 3359796-3359958 bp Feature: domain Description: SASP Location: 3 3 59796-3 3 59958 bp Feature: gene Location: 3438481-3438714 bp Ori: AYE51824.1 Feature: domain Description: PRK12335 Location: 3438604-3438691 bp Feature: domain Description: PRK123 3 5 Location: 3 43 8604-3 43 8691 bp Feature: gene Location: 3438677-3439147 bp Ori: AYE51825.1 Feature: domain Description: AdoMet_MTases Location: 3438704-3438905 bp Feature: domain Description: AdoMet_MTases Location: 3 43 8704-3 43 8905 bp Feature: gene Location: 3439795-3441444 bp Ori: AYE51826.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3439843-3440089 bp Feature: domain Description: RVT_N Location: 3 43 9843 -3 440089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3440143-3440803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 440143 -3 440803 bp Feature: domain Description: GIIM Note: maturase Location: 3440869-3441103 bp Feature: domain Description: GIIM Note: maturase Location: 3 440869-3 441103 bp Feature: gene Location: 3441740-3442975 bp Ori: AYE51827.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 3441782-3442910 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 3 441782-3 442910 bp Feature: gene Location: 3443299-3443838 bp Feature: domain Description: Rve Location: 3443305-3443827 bp Feature: domain Description: Rve Location: 3 443 3 05-3 443 827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpC (COG0596), SASP (pfam00269), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SASP_gamma (TIGR01442), spore_ger_x_C (TIGR02887), DUF4284 (pfam14112), LysR (COG0583), MviM (COG0673)
DUF3231 (pfam11553), PRK12335 (tellurite resistance protein TehB; Provisional), AdoMet_MTases (cl17173), MFS_MdfA_MDR_like (cd17320), Rve (COG3316)

Seq: CP032534.1 Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence (57761 bp)
Overview 1 RT 1: 24986-35623 bp Neighborhood of RT #1 [24986, 35643] Rve MGT RVT-GII GIIM RVT-GII HNHc RVT_N RVT-GII PRK09414 LysR Feature: gene Location: 24986-25693 bp Feature: domain Description: Rve Location: 25016-25628 bp Feature: domain Description: Rve Location: 25016-25628 bp Feature: gene Location: 26150-27360 bp Feature: domain Description: MGT Location: 26171-27119 bp Feature: domain Description: MGT Location: 26171-27119 bp Feature: gene Location: 27685-28749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27691-28108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27691-28108 bp Feature: domain Description: GIIM Note: maturase Location: 28174-28408 bp Feature: domain Description: GIIM Note: maturase Location: 28174 -284 08 bp Feature: gene Location: 28854-30683 bp Ori: AYE53875.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29148-29847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2914 8-2984 7 bp Feature: domain Description: HNHc Note: nucleases Location: 30405-30543 bp Feature: domain Description: HNHc Note: nucleases Location: 304 05-3054 3 bp Feature: gene Location: 31386-31967 bp Feature: domain Description: RVT_N Location: 31434-31680 bp Feature: domain Description: RVT_N Location: 314 34 -31680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31734-31968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31734 -31968 bp Feature: gene Location: 33186-34568 bp Ori: AYE53853.1 Feature: domain Description: PRK09414 Location: 33231-34566 bp Feature: domain Description: PRK094 14 Location: 33231-34 566 bp Feature: gene Location: 34738-35643 bp Ori: AYE53854.1 Feature: domain Description: LysR Location: 34741-35623 bp Feature: domain Description: LysR Location: 34 74 1-35623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), MGT (TIGR01426), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), PRK09414 (NADP-specific glutamate dehydrogenase), LysR (COG0583)

Seq: CP032528.1 Bacillus megaterium NCT-2 plasmid pNCT2_1, complete sequence (132087 bp)
Overview 1 RT 1: 79068-84948 bp 2 RT 2: 123829-131965 bp Neighborhood of RT #1 [79068, 84948] RVT_N RVT-GII GIIM HNHc Peptidase_M78 Neighborhood of RT #2 [123829, 131965] spore_V_T AbrB_C DUF2935 DUF2935 RVT-GII GIIM DUF772 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT_N RVT-GII YkoI Feature: gene Location: 79068-79505 bp Feature: gene Location: 79553-79828 bp Feature: gene Location: 80578-82377 bp Ori: AYE53410.1 Gene: ltrA Feature: domain Description: RVT_N Location: 80638-80878 bp Feature: domain Description: RVT_N Location: 80638-80878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80935-81604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80935 -81604 bp Feature: domain Description: GIIM Note: maturase Location: 81685-81913 bp Feature: domain Description: GIIM Note: maturase Location: 81685 -81913 bp Feature: domain Description: HNHc Note: nucleases Location: 82117-82276 bp Feature: domain Description: HNHc Note: nucleases Location: 82117-82276 bp Feature: gene Location: 82573-83856 bp Ori: AYE53451.1 Feature: domain Description: Peptidase_M78 Location: 83047-83269 bp Feature: domain Description: Peptidase_M78 Location: 83047-83269 bp Feature: gene Location: 83914-84948 bp Feature: gene Location: 123829-124101 bp Ori: AYE53444.1 Feature: domain Description: spore_V_T Location: 123835-123982 bp Feature: domain Description: spore_V_T Location: 123835 -123982 bp Feature: domain Description: AbrB_C Location: 123988-124090 bp Feature: domain Description: AbrB_C Location: 123988-124090 bp Feature: gene Location: 125632-126465 bp Ori: AYE53446.1 Feature: domain Description: DUF2935 Location: 125695-126037 bp Feature: domain Description: DUF2935 Location: 125 695 -126037 bp Feature: domain Description: DUF2935 Location: 126082-126430 bp Feature: domain Description: DUF2935 Location: 126082-126430 bp Feature: gene Location: 126803-127741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126806-127100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126806-127100 bp Feature: domain Description: GIIM Note: maturase Location: 127166-127400 bp Feature: domain Description: GIIM Note: maturase Location: 127166-127400 bp Feature: gene Location: 127821-129362 bp Ori: AYE53447.1 Feature: domain Description: DUF772 Location: 127980-128199 bp Feature: domain Description: DUF772 Location: 127980-128199 bp Feature: domain Description: DDE_Tnp_1_3 Location: 128601-128847 bp Feature: domain Description: DDE_Tnp_1_3 Location: 128601-128847 bp Feature: domain Description: DDE_Tnp_1_6 Location: 128940-129294 bp Feature: domain Description: DDE_Tnp_1_6 Location: 128940-129294 bp Feature: gene Location: 129492-130208 bp Feature: domain Description: RVT_N Location: 129540-129783 bp Feature: domain Description: RVT_N Location: 1295 40-129783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129840-130209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129840-130209 bp Feature: gene Location: 130921-131220 bp Ori: AYE53455.1 Feature: domain Description: YkoI Location: 131008-131215 bp Feature: domain Description: YkoI Location: 131008-131215 bp Feature: gene Location: 131729-131965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Peptidase_M78 (pfam06114), spore_V_T (TIGR02851), AbrB_C (pfam18277), DUF2935 (pfam11155), DUF772 (pfam05598), DDE_Tnp_1_3 (pfam13612)
DDE_Tnp_1_6 (pfam13751), YkoI (COG3212)

Seq: CP032530.1 Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence (131764 bp)
Overview 1 RT 1: 6902-12738 bp 2 RT 2: 48420-55068 bp 3 RT 3: 120887-126720 bp Neighborhood of RT #1 [6902, 12738] TraG-D_C RVT-GII Intron_maturas2 HNHc TraG_VirD4 TraG_VirD4 Neighborhood of RT #2 [48420, 55068] YolD PRK03103 RVT-GII HNHc DUF772 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT-GII PolY_Pol_V_umuC Neighborhood of RT #3 [120887, 127304] DUF3991 Toprim_2 RVT-GII HNHc Peptidase_M78 Feature: gene Location: 6902-7108 bp Feature: gene Location: 7129-8003 bp Feature: domain Description: TraG-D_C Location: 7138-7333 bp Feature: domain Description: TraG-D_C Location: 7138-7333 bp Feature: gene Location: 8111-9934 bp Ori: AYE53470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8384-9212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8384-9212 bp Feature: domain Description: Intron_maturas2 Location: 9290-9584 bp Feature: domain Description: Intron_maturas2 Location: 9290-9584 bp Feature: domain Description: HNHc Note: nucleases Location: 9731-9908 bp Feature: domain Description: HNHc Note: nucleases Location: 9731-9908 bp Feature: gene Location: 10476-12239 bp Ori: AYE53471.1 Feature: domain Description: TraG_VirD4 Location: 11031-11709 bp Feature: domain Description: TraG_VirD4 Location: 11031-11709 bp Feature: domain Description: TraG_VirD4 Location: 12015-12180 bp Feature: domain Description: TraG_VirD4 Location: 12015-12180 bp Feature: gene Location: 12229-12738 bp Feature: gene Location: 48420-48752 bp Ori: AYE53508.1 Feature: domain Description: YolD Location: 48462-48741 bp Feature: domain Description: YolD Location: 4846 2-48741 bp Feature: gene Location: 48766-48999 bp Feature: domain Description: PRK03103 Location: 48772-48991 bp Feature: domain Description: PRK03103 Location: 48772-48991 bp Feature: gene Location: 49095-50354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49185-49521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49185-49521 bp Feature: domain Description: HNHc Note: nucleases Location: 50085-50217 bp Feature: domain Description: HNHc Note: nucleases Location: 50085-50217 bp Feature: gene Location: 50341-51882 bp Ori: AYE53509.1 Feature: domain Description: DUF772 Location: 50500-50719 bp Feature: domain Description: DUF772 Location: 50500-50719 bp Feature: domain Description: DDE_Tnp_1_3 Location: 51121-51367 bp Feature: domain Description: DDE_Tnp_1_3 Location: 51121-5136 7 bp Feature: domain Description: DDE_Tnp_1_6 Location: 51460-51814 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5146 0-51814 bp Feature: gene Location: 51994-52647 bp Ori: AYE53510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52252-52630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52252-526 30 bp Feature: gene Location: 53433-54464 bp Feature: domain Description: PolY_Pol_V_umuC Location: 53469-54456 bp Feature: domain Description: PolY_Pol_V_umuC Location: 5346 9-54456 bp Feature: gene Location: 54820-55068 bp Feature: gene Location: 120887-121876 bp Ori: AYE53571.1 Feature: domain Description: DUF3991 Location: 121262-121451 bp Feature: domain Description: DUF3991 Location: 12126 2-121451 bp Feature: domain Description: Toprim_2 Location: 121517-121793 bp Feature: domain Description: Toprim_2 Location: 121517-121793 bp Feature: gene Location: 121956-122948 bp Feature: gene Location: 123170-125092 bp Ori: AYE53573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123491-124226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123491-124226 bp Feature: domain Description: HNHc Note: nucleases Location: 124847-124982 bp Feature: domain Description: HNHc Note: nucleases Location: 124847-124982 bp Feature: gene Location: 125089-125290 bp Feature: gene Location: 125952-127304 bp Ori: AYE53574.1 Feature: domain Description: Peptidase_M78 Location: 126495-126720 bp Feature: domain Description: Peptidase_M78 Location: 126 495-126 720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG_VirD4, YolD (pfam08863), PRK03103 (DNA polymerase IV; Reviewed), DUF772 (pfam05598), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751)
PolY_Pol_V_umuC (cd01700), DUF3991 (pfam13154), Toprim_2 (pfam13155), Peptidase_M78 (pfam06114)