myRT

myRT report for GCA_000340885.1_ASM34088v1

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Seq: CP004121.1 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome (6530257 bp)
Overview 1 RT 1: 420784-437919 bp 2 RT 2: 653059-659194 bp 3 RT 3: 1355962-1361395 bp 4 RT 4: 1490482-1496800 bp 5 RT 5: 2316312-2322690 bp 6 RT 6: 3775752-3780675 bp 7 RT 7: 4056632-4061537 bp 8 RT 8: 5642615-5650206 bp Neighborhood of RT #1 [420784, 437972] PRK12467 PksD PksD KOG1202 PP-binding PP-binding PksD PRK12467 fabD RVT-GII SalY SalY LolD Neighborhood of RT #2 [653059, 659202] PRK06811 DUF4179 DUF5643 RVT-GII GIIM PRK14054 arb Neighborhood of RT #3 [1355962, 1361442] COG5263 RVT-GII GIIM PRK13342 rmlC Neighborhood of RT #4 [1490482, 1496862] PTS_HPr_family Adenylsuccinate_lyase_2 RVT-GII GIIM Amidase_6 ST7 Neighborhood of RT #5 [2316312, 2322695] pcaJ_scoB_fam RVT-GII GIIM Uup Uup PRK14453 Neighborhood of RT #6 [3775752, 3780845] RVT_N RVT-GII YkfC McrA AcrR Neighborhood of RT #7 [4056632, 4061668] PBP1_GGBP RVT_N RVT-GII YkfC McrA HTH_28 HTH_28 HTH_28 Neighborhood of RT #8 [5642615, 5650208] eno COG2112 RVT-GII GIIM PRK05434 PRK13962 Feature: gene Location: 420784-432048 bp Ori: AGF54193.1 Gene: pksN Feature: domain Description: PRK12467 Location: 420898-424066 bp Feature: domain Description: PRK1 2467 Location: 420898-424066 bp Feature: domain Description: PksD Location: 424132-425665 bp Feature: domain Description: PksD Location: 4241 32-425665 bp Feature: domain Description: PksD Location: 425695-426511 bp Feature: domain Description: PksD Location: 425695-42651 1 bp Feature: domain Description: KOG1202 Location: 427429-427918 bp Feature: domain Description: KOG1 202 Location: 427429-42791 8 bp Feature: domain Description: PP-binding Location: 428251-428443 bp Feature: domain Description: PP-binding Location: 428251 -428443 bp Feature: domain Description: PP-binding Location: 428608-428791 bp Feature: domain Description: PP-binding Location: 428608-428791 bp Feature: domain Description: PksD Location: 428944-430750 bp Feature: domain Description: PksD Location: 428944-430750 bp Feature: domain Description: PRK12467 Location: 430819-431530 bp Feature: domain Description: PRK1 2467 Location: 43081 9-431 530 bp Feature: gene Location: 432093-433181 bp Ori: AGF54194.1 Gene: baeE Feature: domain Description: fabD Location: 432117-432948 bp Feature: domain Description: fabD Location: 4321 1 7-432948 bp Feature: gene Location: 434302-434475 bp Ori: AGF54195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434308-434470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434308-434470 bp Feature: gene Location: 435024-437249 bp Ori: AGF54196.1 Feature: domain Description: SalY Location: 435087-436125 bp Feature: domain Description: SalY Location: 435087-4361 25 bp Feature: domain Description: SalY Location: 436179-437235 bp Feature: domain Description: SalY Location: 4361 79-437235 bp Feature: gene Location: 437274-437972 bp Ori: AGF54197.1 Feature: domain Description: LolD Location: 437286-437919 bp Feature: domain Description: LolD Location: 437286-43791 9 bp Feature: gene Location: 653059-653619 bp Ori: AGF54381.1 Gene: rpoD1 Feature: domain Description: PRK06811 Location: 653062-653593 bp Feature: domain Description: PRK0681 1 Location: 653062-653593 bp Feature: gene Location: 653621-654739 bp Ori: AGF54382.1 Feature: domain Description: DUF4179 Location: 653744-654023 bp Feature: domain Description: DUF41 79 Location: 653744-654023 bp Feature: domain Description: DUF5643 Location: 654305-654638 bp Feature: domain Description: DUF5643 Location: 654305-654638 bp Feature: gene Location: 655299-656714 bp Ori: AGF54383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655656-656274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 655656-656274 bp Feature: domain Description: GIIM Note: maturase Location: 656325-656553 bp Feature: domain Description: GIIM Note: maturase Location: 656325-656553 bp Feature: gene Location: 656871-657344 bp Ori: AGF54384.1 Gene: msrA Feature: domain Description: PRK14054 Location: 656874-657339 bp Feature: domain Description: PRK1 4054 Location: 656874-657339 bp Feature: gene Location: 657787-659202 bp Ori: AGF54385.1 Gene: abgA1 Feature: domain Description: arb Location: 657799-659194 bp Feature: domain Description: arb Location: 657799-6591 94 bp Feature: gene Location: 1355962-1357254 bp Feature: gene Location: 1357369-1358283 bp Ori: AGF55000.1 Feature: domain Description: COG5263 Location: 1357456-1357744 bp Feature: domain Description: COG5263 Location: 1 357456-1 357744 bp Feature: gene Location: 1358861-1360276 bp Ori: AGF55001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359218-1359836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35921 8-1 359836 bp Feature: domain Description: GIIM Note: maturase Location: 1359887-1360115 bp Feature: domain Description: GIIM Note: maturase Location: 1 359887-1 3601 1 5 bp Feature: gene Location: 1360496-1360777 bp Ori: AGF55002.1 Feature: domain Description: PRK13342 Location: 1360505-1360760 bp Feature: domain Description: PRK1 3342 Location: 1 360505-1 360760 bp Feature: gene Location: 1360852-1361442 bp Ori: AGF55003.1 Gene: rmlC2 Feature: domain Description: rmlC Location: 1360867-1361395 bp Feature: domain Description: rmlC Location: 1 360867-1 361 395 bp Feature: gene Location: 1490482-1490742 bp Ori: AGF55129.1 Feature: domain Description: PTS_HPr_family Location: 1490485-1490728 bp Feature: domain Description: PTS_HPr_family Location: 1 490485-1 490728 bp Feature: gene Location: 1490890-1492320 bp Ori: AGF55130.1 Gene: purB Feature: domain Description: Adenylsuccinate_lyase_2 Location: 1490917-1492222 bp Feature: domain Description: Adenylsuccinate_lyase_2 Location: 1 49091 7-1 492222 bp Feature: gene Location: 1492799-1494214 bp Ori: AGF55131.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493156-1493774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4931 56-1 493774 bp Feature: domain Description: GIIM Note: maturase Location: 1493825-1494053 bp Feature: domain Description: GIIM Note: maturase Location: 1 493825-1 494053 bp Feature: gene Location: 1494320-1495303 bp Ori: AGF55132.1 Feature: domain Description: Amidase_6 Location: 1494875-1495274 bp Feature: domain Description: Amidase_6 Location: 1 494875-1 495274 bp Feature: gene Location: 1495639-1496862 bp Ori: AGF55133.1 Feature: domain Description: ST7 Location: 1496119-1496800 bp Feature: domain Description: ST7 Location: 1 4961 1 9-1 496800 bp Feature: gene Location: 2316312-2316965 bp Ori: AGF55867.1 Gene: ctfB1 Feature: domain Description: pcaJ_scoB_fam Location: 2316324-2316933 bp Feature: domain Description: pcaJ_scoB_fam Location: 231 6324-231 6933 bp Feature: gene Location: 2317227-2317322 bp Feature: gene Location: 2318336-2319751 bp Ori: AGF55869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2318693-2319311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 8693-231 931 1 bp Feature: domain Description: GIIM Note: maturase Location: 2319362-2319590 bp Feature: domain Description: GIIM Note: maturase Location: 231 9362-231 9590 bp Feature: gene Location: 2320020-2321498 bp Ori: AGF55870.1 Feature: domain Description: Uup Location: 2320023-2320263 bp Feature: domain Description: Uup Location: 2320023-2320263 bp Feature: domain Description: Uup Location: 2320296-2321493 bp Feature: domain Description: Uup Location: 2320296-2321 493 bp Feature: gene Location: 2321661-2322695 bp Ori: AGF55871.1 Gene: rlmN2 Feature: domain Description: PRK14453 Location: 2321667-2322690 bp Feature: domain Description: PRK1 4453 Location: 2321 667-2322690 bp Feature: gene Location: 3775752-3776210 bp Feature: gene Location: 3776418-3776585 bp Feature: gene Location: 3776899-3778716 bp Ori: AGF57251.1 Feature: domain Description: RVT_N Location: 3776956-3777196 bp Feature: domain Description: RVT_N Location: 3776956-37771 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3777256-3777907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3777256-3777907 bp Feature: domain Description: YkfC Location: 3778045-3778204 bp Feature: domain Description: YkfC Location: 3778045-3778204 bp Feature: domain Description: McrA Location: 3778375-3778600 bp Feature: domain Description: McrA Location: 3778375-3778600 bp Feature: gene Location: 3779457-3779981 bp Feature: gene Location: 3780282-3780845 bp Ori: AGF57253.1 Feature: domain Description: AcrR Location: 3780342-3780675 bp Feature: domain Description: AcrR Location: 3780342-3780675 bp Feature: gene Location: 4056632-4057684 bp Ori: AGF57508.1 Gene: mglB8 Feature: domain Description: PBP1_GGBP Location: 4056746-4057667 bp Feature: domain Description: PBP1 _GGBP Location: 4056746-4057667 bp Feature: gene Location: 4057873-4058115 bp Feature: gene Location: 4058229-4060046 bp Ori: AGF57510.1 Feature: domain Description: RVT_N Location: 4058286-4058526 bp Feature: domain Description: RVT_N Location: 4058286-4058526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4058586-4059237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4058586-4059237 bp Feature: domain Description: YkfC Location: 4059375-4059534 bp Feature: domain Description: YkfC Location: 4059375-4059534 bp Feature: domain Description: McrA Location: 4059705-4059930 bp Feature: domain Description: McrA Location: 4059705-4059930 bp Feature: gene Location: 4060707-4060856 bp Feature: gene Location: 4060985-4061668 bp Ori: AGF57512.1 Feature: domain Description: HTH_28 Location: 4061018-4061165 bp Feature: domain Description: HTH_28 Location: 4061 01 8-4061 1 65 bp Feature: domain Description: HTH_28 Location: 4061192-4061309 bp Feature: domain Description: HTH_28 Location: 4061 1 92-4061 309 bp Feature: domain Description: HTH_28 Location: 4061381-4061537 bp Feature: domain Description: HTH_28 Location: 4061 381 -4061 537 bp Feature: gene Location: 5642615-5643907 bp Ori: AGF58857.1 Gene: eno2 Feature: domain Description: eno Location: 5642633-5643902 bp Feature: domain Description: eno Location: 5642633-5643902 bp Feature: gene Location: 5644889-5645482 bp Ori: AGF58858.1 Feature: domain Description: COG2112 Location: 5644940-5645375 bp Feature: domain Description: COG21 1 2 Location: 5644940-5645375 bp Feature: gene Location: 5645748-5647106 bp Ori: AGF58859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5646048-5646666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5646048-5646666 bp Feature: domain Description: GIIM Note: maturase Location: 5646717-5646945 bp Feature: domain Description: GIIM Note: maturase Location: 564671 7-5646945 bp Feature: gene Location: 5647621-5649159 bp Ori: AGF58860.1 Gene: gpmI Feature: domain Description: PRK05434 Location: 5647627-5649148 bp Feature: domain Description: PRK05434 Location: 5647627-56491 48 bp Feature: gene Location: 5649462-5650208 bp Ori: AGF58861.1 Gene: tpiA Feature: domain Description: PRK13962 Location: 5649465-5650206 bp Feature: domain Description: PRK1 3962 Location: 5649465-5650206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12467 (peptide synthase; Provisional), PksD (COG3321), KOG1202 (KOG1202, Animal-type fatty acid synthase and related proteins ), PP-binding (pfam00550), fabD (TIGR00128), RVT-GII, SalY (COG0577), LolD (COG1136), PRK06811 (RNA polymerase factor sigma-70; Validated), DUF4179 (pfam13786)
DUF5643 (pfam18705), GIIM (pfam08388), PRK14054 (peptide-methionine (S)-S-oxide reductase), arb (PRK09593), COG5263 (Glucan-binding domain (YG repeat) ), PRK13342 (recombination factor protein RarA; Reviewed), rmlC (TIGR01221), PTS_HPr_family (TIGR01003), Adenylsuccinate_lyase_2 (cd03302), Amidase_6 (pfam12671)
ST7 (pfam04184), pcaJ_scoB_fam (TIGR02428), Uup (COG0488), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional), RVT_N (pfam13655), YkfC (COG3344), McrA (COG4058), AcrR (COG1309), PBP1_GGBP (cd01539), HTH_28 (pfam13518)
eno (TIGR01060), COG2112 (Predicted Ser/Thr protein kinase ), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional)