myRT

myRT report for GCA_000346065.1_ASM34606v1

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Seq: CP004139.1 Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence (1683348 bp)
Overview 1 RT 1: 674575-677316 bp 2 RT 2: 910665-916714 bp 3 RT 3: 1400403-1403621 bp 4 RT 4: 1574140-1577845 bp Neighborhood of RT #1 [674575, 677402] COG3415 RVT-GII GIIM DDE_3 Neighborhood of RT #2 [910665, 916830] hutH PRK09356 RVT-GII GIIM AraJ HTH_ARSR Neighborhood of RT #3 [1400403, 1403641] MazF MazF RVT-GII GIIM DUF982 Neighborhood of RT #4 [1574140, 1577859] COG3335 RVT-GII GIIM COG3415 LivF Feature: gene Location: 674575-674958 bp Ori: AGG71637.1 Feature: domain Description: COG3415 Location: 674581-674929 bp Feature: domain Description: COG341 5 Location: 674581 -674929 bp Feature: gene Location: 674931-675062 bp Feature: gene Location: 675574-676833 bp Ori: AGG71639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675790-676444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675790-676444 bp Feature: domain Description: GIIM Note: maturase Location: 676525-676747 bp Feature: domain Description: GIIM Note: maturase Location: 676525-676747 bp Feature: gene Location: 676728-676994 bp Feature: gene Location: 676929-677402 bp Ori: AGG71641.1 Feature: domain Description: DDE_3 Location: 676938-677316 bp Feature: domain Description: DDE_3 Location: 676938-67731 6 bp Feature: gene Location: 910665-912200 bp Ori: AGG71842.1 Gene: hutH1 Feature: domain Description: hutH Location: 910674-912189 bp Feature: domain Description: hutH Location: 91 0674-91 21 89 bp Feature: gene Location: 912197-913567 bp Ori: AGG71843.1 Gene: hutI Feature: domain Description: PRK09356 Location: 912356-913559 bp Feature: domain Description: PRK09356 Location: 91 2356-91 3559 bp Feature: gene Location: 913647-914987 bp Ori: AGG71844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913953-914568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 3953-91 4568 bp Feature: domain Description: GIIM Note: maturase Location: 914625-914838 bp Feature: domain Description: GIIM Note: maturase Location: 91 4625-91 4838 bp Feature: gene Location: 915185-916369 bp Ori: AGG71845.1 Feature: domain Description: AraJ Location: 915188-916346 bp Feature: domain Description: AraJ Location: 91 51 88-91 6346 bp Feature: gene Location: 916459-916830 bp Ori: AGG71846.1 Feature: domain Description: HTH_ARSR Location: 916516-916714 bp Feature: domain Description: HTH_ARSR Location: 91 651 6-91 671 4 bp Feature: gene Location: 1400403-1400606 bp Ori: AGG72311.1 Feature: domain Description: MazF Location: 1400406-1400517 bp Feature: domain Description: MazF Location: 1 400406-1 40051 7 bp Feature: gene Location: 1400606-1400953 bp Ori: AGG72312.1 Feature: domain Description: MazF Location: 1400609-1400942 bp Feature: domain Description: MazF Location: 1 400609-1 400942 bp Feature: gene Location: 1400906-1402084 bp Ori: AGG72313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401050-1401665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 401 050-1 401 665 bp Feature: domain Description: GIIM Note: maturase Location: 1401722-1401935 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 722-1 401 935 bp Feature: gene Location: 1403034-1403336 bp Feature: gene Location: 1403381-1403641 bp Ori: AGG72315.1 Feature: domain Description: DUF982 Location: 1403414-1403621 bp Feature: domain Description: DUF982 Location: 1 40341 4-1 403621 bp Feature: gene Location: 1574140-1574655 bp Ori: AGG72482.1 Feature: domain Description: COG3335 Location: 1574260-1574644 bp Feature: domain Description: COG3335 Location: 1 574260-1 574644 bp Feature: gene Location: 1574380-1574814 bp Feature: gene Location: 1574709-1575968 bp Ori: AGG72484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574925-1575579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 574925-1 575579 bp Feature: domain Description: GIIM Note: maturase Location: 1575660-1575882 bp Feature: domain Description: GIIM Note: maturase Location: 1 575660-1 575882 bp Feature: gene Location: 1576563-1576970 bp Ori: AGG72485.1 Feature: domain Description: COG3415 Location: 1576566-1576968 bp Feature: domain Description: COG341 5 Location: 1 576566-1 576968 bp Feature: gene Location: 1577143-1577859 bp Ori: AGG72486.1 Feature: domain Description: LivF Location: 1577158-1577845 bp Feature: domain Description: LivF Location: 1 5771 58-1 577845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), hutH (TIGR01225), PRK09356 (imidazolonepropionase; Validated), AraJ (COG2814), HTH_ARSR (smart00418), MazF (COG2337), DUF982 (pfam06169)
COG3335 (Transposase ), LivF (COG0410)

Seq: CP004138.1 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence (1352561 bp)
Overview 1 RT 1: 1017868-1024389 bp 2 RT 2: 1061814-1066630 bp Neighborhood of RT #1 [1017868, 1024389] Kup COG3335 RVT-GII GIIM COG3415 Neighborhood of RT #2 [1061814, 1066630] IlvA INT_RitA_C_like RVT-GII GIIM IS285 Feature: gene Location: 1017868-1019769 bp Ori: AGG70683.1 Gene: kup2 Feature: domain Description: Kup Location: 1017907-1019767 bp Feature: domain Description: Kup Location: 1017907-1019767 bp Feature: gene Location: 1020409-1020924 bp Ori: AGG70684.1 Feature: domain Description: COG3335 Location: 1020529-1020913 bp Feature: domain Description: COG3335 Location: 102 052 9-102 0913 bp Feature: gene Location: 1020978-1022237 bp Ori: AGG70685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021194-1021848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 1194-102 1848 bp Feature: domain Description: GIIM Note: maturase Location: 1021929-1022151 bp Feature: domain Description: GIIM Note: maturase Location: 102 192 9-102 2 151 bp Feature: gene Location: 1022832-1023239 bp Ori: AGG70686.1 Feature: domain Description: COG3415 Location: 1022835-1023237 bp Feature: domain Description: COG3415 Location: 102 2 835-102 32 37 bp Feature: gene Location: 1023985-1024389 bp Feature: gene Location: 1061814-1062791 bp Ori: AGG70723.1 Feature: domain Description: IlvA Location: 1061820-1062777 bp Feature: domain Description: IlvA Location: 106182 0-1062 777 bp Feature: gene Location: 1063081-1063422 bp Ori: AGG70724.1 Feature: domain Description: INT_RitA_C_like Location: 1063084-1063405 bp Feature: domain Description: INT_RitA_C_like Location: 1063084-1063405 bp Feature: gene Location: 1064033-1065550 bp Ori: AGG70725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064336-1065098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064336-1065098 bp Feature: domain Description: GIIM Note: maturase Location: 1065167-1065437 bp Feature: domain Description: GIIM Note: maturase Location: 1065167-1065437 bp Feature: gene Location: 1066121-1066276 bp Ori: AGG70726.1 Feature: domain Description: IS285 Location: 1066130-1066238 bp Feature: domain Description: IS2 85 Location: 1066130-10662 38 bp Feature: gene Location: 1066352-1066630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Kup (COG3158), COG3335 (Transposase ), RVT-GII, GIIM (pfam08388), COG3415 (Transposase ), IlvA (COG1171), INT_RitA_C_like (cd01188), IS285 (COG3328)