myRT

myRT report for GCA_000380335.1_ASM38033v1

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Seq: CP005094.1 Azotobacter vinelandii CA, complete genome (5366370 bp)
Overview 1 RT 1: 1312274-1319319 bp 2 RT 2: 1854696-1861578 bp 3 RT 3: 2028076-2036186 bp 4 RT 4: 2455630-2461192 bp 5 RT 5: 2469968-2475193 bp 6 RT 6: 2828243-2833396 bp 7 RT 7: 4649709-4656902 bp 8 RT 8: 4677090-4683094 bp Neighborhood of RT #1 [1312274, 1319360] groES groEL RVT_N RVT-GII GIIM HNH PRK10839 HTH_32 Neighborhood of RT #2 [1854696, 1861578] pepN YgfH_subfam RVT-GII GIIM DUF3144 Neighborhood of RT #3 [2028076, 2036206] Peptidase_C39A DadA RVT-GII thrS Neighborhood of RT #4 [2455630, 2461350] HTH_32 IS5 RVT_N RVT-GII GIIM IS5 NTP_transf_5 Neighborhood of RT #5 [2469968, 2475261] LysR RVT-GII PRK11053 LysR Neighborhood of RT #6 [2828243, 2833396] CysI COG3749 RVT-GII PRK11778 Neighborhood of RT #7 [4649709, 4656907] DDE_3 sCache_2 RVT-GII GIIM PRK10218 PRK01269 Neighborhood of RT #8 [4677090, 4683096] PRK11649 AnmK RVT-GII GIIM PRK13623 argC Feature: gene Location: 1312274-1312567 bp Ori: AGK12432.1 Gene: groES Feature: domain Description: groES Location: 1312277-1312562 bp Feature: domain Description: groES Location: 1 31 2277-1 31 2562 bp Feature: gene Location: 1312613-1314253 bp Ori: AGK12440.1 Gene: groEL Feature: domain Description: groEL Location: 1312619-1314239 bp Feature: domain Description: groEL Location: 1 31 261 9-1 31 4239 bp Feature: gene Location: 1315430-1316977 bp Ori: AGK12903.1 Feature: domain Description: RVT_N Location: 1315433-1315580 bp Feature: domain Description: RVT_N Location: 1 31 5433-1 31 5580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315628-1316273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 5628-1 31 6273 bp Feature: domain Description: GIIM Note: maturase Location: 1316324-1316558 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 6324-1 31 6558 bp Feature: domain Description: HNH Note: nucleases Location: 1316798-1316933 bp Feature: domain Description: HNH Note: nucleases Location: 1 31 6798-1 31 6933 bp Feature: gene Location: 1317200-1317892 bp Ori: AGK13971.1 Gene: rsuA Feature: domain Description: PRK10839 Location: 1317203-1317884 bp Feature: domain Description: PRK1 0839 Location: 1 31 7203-1 31 7884 bp Feature: gene Location: 1318887-1319360 bp Ori: AGK15342.1 Feature: domain Description: HTH_32 Location: 1319088-1319319 bp Feature: domain Description: HTH_32 Location: 1 31 9088-1 31 931 9 bp Feature: gene Location: 1854696-1857353 bp Ori: AGK13833.1 Gene: pepN Feature: domain Description: pepN Location: 1854699-1857351 bp Feature: domain Description: pepN Location: 1 854699-1 857351 bp Feature: gene Location: 1857532-1859028 bp Ori: AGK15126.1 Feature: domain Description: YgfH_subfam Location: 1857574-1859011 bp Feature: domain Description: YgfH_subfam Location: 1 857574-1 85901 1 bp Feature: gene Location: 1859491-1860858 bp Ori: AGK12902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1859824-1860436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 859824-1 860436 bp Feature: domain Description: GIIM Note: maturase Location: 1860496-1860712 bp Feature: domain Description: GIIM Note: maturase Location: 1 860496-1 86071 2 bp Feature: gene Location: 1860977-1861264 bp Ori: AGK16871.1 Feature: domain Description: DUF3144 Location: 1860986-1861211 bp Feature: domain Description: DUF31 44 Location: 1 860986-1 861 21 1 bp Feature: gene Location: 1861258-1861578 bp Feature: gene Location: 2028076-2028594 bp Ori: AGK15085.1 Feature: domain Description: Peptidase_C39A Location: 2028142-2028550 bp Feature: domain Description: Peptidase_C39A Location: 20281 42-2028550 bp Feature: gene Location: 2028606-2029889 bp Ori: AGK16808.1 Feature: domain Description: DadA Location: 2028693-2029824 bp Feature: domain Description: DadA Location: 2028693-2029824 bp Feature: gene Location: 2030625-2031302 bp Ori: AGK15084.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030982-2031300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030982-2031 300 bp Feature: gene Location: 2032180-2032437 bp Feature: gene Location: 2034284-2036206 bp Ori: AGK12520.1 Gene: thrS Feature: domain Description: thrS Location: 2034290-2036186 bp Feature: domain Description: thrS Location: 2034290-20361 86 bp Feature: gene Location: 2455630-2456103 bp Ori: AGK16678.1 Feature: domain Description: HTH_32 Location: 2455831-2456062 bp Feature: domain Description: HTH_32 Location: 2455831 -2456062 bp Feature: gene Location: 2456540-2457073 bp Ori: AGK14956.1 Feature: domain Description: IS5 Location: 2456729-2457062 bp Feature: domain Description: IS5 Location: 2456729-2457062 bp Feature: gene Location: 2457665-2459182 bp Ori: AGK12901.1 Feature: domain Description: RVT_N Location: 2457749-2457971 bp Feature: domain Description: RVT_N Location: 2457749-2457971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458025-2458667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458025-2458667 bp Feature: domain Description: GIIM Note: maturase Location: 2458721-2458964 bp Feature: domain Description: GIIM Note: maturase Location: 2458721 -2458964 bp Feature: gene Location: 2459568-2459711 bp Ori: AGK14955.1 Feature: domain Description: IS5 Location: 2459580-2459685 bp Feature: domain Description: IS5 Location: 2459580-2459685 bp Feature: gene Location: 2460232-2461350 bp Ori: AGK14954.1 Feature: domain Description: NTP_transf_5 Location: 2460478-2461192 bp Feature: domain Description: NTP_transf_5 Location: 2460478-2461 1 92 bp Feature: gene Location: 2469968-2470297 bp Feature: gene Location: 2470418-2471371 bp Ori: AGK14947.1 Feature: domain Description: LysR Location: 2470427-2471309 bp Feature: domain Description: LysR Location: 2470427-2471 309 bp Feature: gene Location: 2471487-2473262 bp Ori: AGK12900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472201-2472891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472201 -2472891 bp Feature: gene Location: 2473508-2474161 bp Ori: AGK12750.1 Feature: domain Description: PRK11053 Location: 2473514-2474156 bp Feature: domain Description: PRK1 1 053 Location: 247351 4-24741 56 bp Feature: gene Location: 2474302-2475261 bp Ori: AGK14946.1 Feature: domain Description: LysR Location: 2474311-2475193 bp Feature: domain Description: LysR Location: 247431 1 -24751 93 bp Feature: gene Location: 2828243-2829901 bp Ori: AGK13373.1 Gene: cysI Feature: domain Description: CysI Location: 2828246-2829881 bp Feature: domain Description: CysI Location: 2828246-2829881 bp Feature: gene Location: 2829885-2830382 bp Ori: AGK14860.1 Feature: domain Description: COG3749 Location: 2829888-2830377 bp Feature: domain Description: COG3749 Location: 2829888-2830377 bp Feature: gene Location: 2830823-2831683 bp Ori: AGK12906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830988-2831600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830988-2831 600 bp Feature: gene Location: 2832257-2833285 bp Ori: AGK13117.1 Feature: domain Description: PRK11778 Location: 2832272-2833256 bp Feature: domain Description: PRK1 1 778 Location: 2832272-2833256 bp Feature: gene Location: 2833319-2833396 bp Feature: gene Location: 4649709-4650350 bp Ori: AGK14316.1 Feature: domain Description: DDE_3 Location: 4649844-4650264 bp Feature: domain Description: DDE_3 Location: 4649844-4650264 bp Feature: gene Location: 4650962-4651399 bp Ori: AGK14315.1 Feature: domain Description: sCache_2 Location: 4651037-4651388 bp Feature: domain Description: sCache_2 Location: 4651 037-4651 388 bp Feature: gene Location: 4651660-4653027 bp Ori: AGK12905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651993-4652605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651 993-4652605 bp Feature: domain Description: GIIM Note: maturase Location: 4652665-4652881 bp Feature: domain Description: GIIM Note: maturase Location: 4652665-4652881 bp Feature: gene Location: 4653490-4655310 bp Ori: AGK14052.1 Gene: typA Feature: domain Description: PRK10218 Location: 4653493-4655302 bp Feature: domain Description: PRK1 021 8 Location: 4653493-4655302 bp Feature: gene Location: 4655453-4656907 bp Ori: AGK13097.1 Gene: thiI Feature: domain Description: PRK01269 Location: 4655456-4656902 bp Feature: domain Description: PRK01 269 Location: 4655456-4656902 bp Feature: gene Location: 4677090-4678532 bp Ori: AGK14309.1 Feature: domain Description: PRK11649 Location: 4677438-4678491 bp Feature: domain Description: PRK1 1 649 Location: 4677438-4678491 bp Feature: gene Location: 4678560-4679654 bp Ori: AGK12531.1 Gene: anmK Feature: domain Description: AnmK Location: 4678569-4679652 bp Feature: domain Description: AnmK Location: 4678569-4679652 bp Feature: gene Location: 4679760-4681127 bp Ori: AGK12904.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680093-4680705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680093-4680705 bp Feature: domain Description: GIIM Note: maturase Location: 4680765-4680981 bp Feature: domain Description: GIIM Note: maturase Location: 4680765-4680981 bp Feature: gene Location: 4681578-4681928 bp Ori: AGK12862.1 Gene: erpA Feature: domain Description: PRK13623 Location: 4681599-4681926 bp Feature: domain Description: PRK1 3623 Location: 4681 599-4681 926 bp Feature: gene Location: 4682062-4683096 bp Ori: AGK12749.1 Gene: argC Feature: domain Description: argC Location: 4682065-4683094 bp Feature: domain Description: argC Location: 4682065-4683094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10839 (16S rRNA pseudouridine(516) synthase RsuA), HTH_32 (pfam13565), pepN (PRK14015), YgfH_subfam (TIGR03458)
DUF3144 (pfam11342), Peptidase_C39A (cd02549), DadA (COG0665), thrS (TIGR00418), IS5 (COG3039), NTP_transf_5 (pfam14907), LysR (COG0583), PRK11053 (oxygen-insensitive NAD(P)H nitroreductase), CysI (TIGR02041), COG3749 (Uncharacterized conserved protein, DUF934 family )
PRK11778 (putative inner membrane peptidase; Provisional), DDE_3 (pfam13358), sCache_2 (pfam17200), PRK10218 (translational GTPase TypA), PRK01269 (tRNA s(4)U8 sulfurtransferase; Provisional), PRK11649 (putative peptidase; Provisional), AnmK (pfam03702), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional), argC (TIGR01850)