myRT

myRT report for GCA_000380365.1_ASM38036v1

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Seq: CP005095.1 Azotobacter vinelandii CA6, complete genome (5323210 bp)
Overview 1 RT 1: 1312260-1319305 bp 2 RT 2: 1854684-1861566 bp 3 RT 3: 2028064-2036174 bp 4 RT 4: 2455618-2461180 bp 5 RT 5: 2469956-2475181 bp 6 RT 6: 2828231-2833384 bp 7 RT 7: 4649697-4656890 bp 8 RT 8: 4677078-4683082 bp Neighborhood of RT #1 [1312260, 1319346] groES groEL RVT_N RVT-GII GIIM HNH PRK10839 HTH_32 Neighborhood of RT #2 [1854684, 1861566] pepN YgfH_subfam RVT-GII GIIM DUF3144 Neighborhood of RT #3 [2028064, 2036194] Peptidase_C39A DadA RVT-GII thrS Neighborhood of RT #4 [2455618, 2461338] HTH_32 IS5 RVT_N RVT-GII GIIM IS5 NTP_transf_5 Neighborhood of RT #5 [2469956, 2475249] LysR RVT-GII PRK11053 LysR Neighborhood of RT #6 [2828231, 2833384] CysI COG3749 RVT-GII PRK11778 Neighborhood of RT #7 [4649697, 4656895] DDE_3 sCache_2 RVT-GII GIIM PRK10218 PRK01269 Neighborhood of RT #8 [4677078, 4683084] PRK11649 AnmK RVT-GII GIIM PRK13623 argC Feature: gene Location: 1312260-1312553 bp Ori: AGK18043.1 Gene: groES Feature: domain Description: groES Location: 1312263-1312548 bp Feature: domain Description: groES Location: 1 31 2263-1 31 2548 bp Feature: gene Location: 1312599-1314239 bp Ori: AGK18041.1 Gene: groEL Feature: domain Description: groEL Location: 1312605-1314225 bp Feature: domain Description: groEL Location: 1 31 2605-1 31 4225 bp Feature: gene Location: 1315416-1316963 bp Ori: AGK19865.1 Feature: domain Description: RVT_N Location: 1315419-1315566 bp Feature: domain Description: RVT_N Location: 1 31 541 9-1 31 5566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1315614-1316259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 561 4-1 31 6259 bp Feature: domain Description: GIIM Note: maturase Location: 1316310-1316544 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 631 0-1 31 6544 bp Feature: domain Description: HNH Note: nucleases Location: 1316784-1316919 bp Feature: domain Description: HNH Note: nucleases Location: 1 31 6784-1 31 691 9 bp Feature: gene Location: 1317186-1317878 bp Ori: AGK18770.1 Gene: rsuA Feature: domain Description: PRK10839 Location: 1317189-1317870 bp Feature: domain Description: PRK1 0839 Location: 1 31 71 89-1 31 7870 bp Feature: gene Location: 1318873-1319346 bp Ori: AGK19866.1 Feature: domain Description: HTH_32 Location: 1319074-1319305 bp Feature: domain Description: HTH_32 Location: 1 31 9074-1 31 9305 bp Feature: gene Location: 1854684-1857341 bp Ori: AGK18479.1 Gene: pepN Feature: domain Description: pepN Location: 1854687-1857339 bp Feature: domain Description: pepN Location: 1 854687-1 857339 bp Feature: gene Location: 1857520-1859016 bp Ori: AGK20241.1 Feature: domain Description: YgfH_subfam Location: 1857562-1858999 bp Feature: domain Description: YgfH_subfam Location: 1 857562-1 858999 bp Feature: gene Location: 1859479-1860846 bp Ori: AGK20242.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1859812-1860424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85981 2-1 860424 bp Feature: domain Description: GIIM Note: maturase Location: 1860484-1860700 bp Feature: domain Description: GIIM Note: maturase Location: 1 860484-1 860700 bp Feature: gene Location: 1860965-1861252 bp Ori: AGK20243.1 Feature: domain Description: DUF3144 Location: 1860974-1861199 bp Feature: domain Description: DUF31 44 Location: 1 860974-1 861 1 99 bp Feature: gene Location: 1861246-1861566 bp Feature: gene Location: 2028064-2028582 bp Ori: AGK20352.1 Feature: domain Description: Peptidase_C39A Location: 2028130-2028538 bp Feature: domain Description: Peptidase_C39A Location: 20281 30-2028538 bp Feature: gene Location: 2028594-2029877 bp Ori: AGK20353.1 Feature: domain Description: DadA Location: 2028681-2029812 bp Feature: domain Description: DadA Location: 2028681 -202981 2 bp Feature: gene Location: 2030613-2031290 bp Ori: AGK20354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030970-2031288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030970-2031 288 bp Feature: gene Location: 2032168-2032425 bp Feature: gene Location: 2034272-2036194 bp Ori: AGK18861.1 Gene: thrS Feature: domain Description: thrS Location: 2034278-2036174 bp Feature: domain Description: thrS Location: 2034278-20361 74 bp Feature: gene Location: 2455618-2456091 bp Ori: AGK20620.1 Feature: domain Description: HTH_32 Location: 2455819-2456050 bp Feature: domain Description: HTH_32 Location: 245581 9-2456050 bp Feature: gene Location: 2456528-2457061 bp Ori: AGK20621.1 Feature: domain Description: IS5 Location: 2456717-2457050 bp Feature: domain Description: IS5 Location: 245671 7-2457050 bp Feature: gene Location: 2457653-2459170 bp Ori: AGK20622.1 Feature: domain Description: RVT_N Location: 2457737-2457959 bp Feature: domain Description: RVT_N Location: 2457737-2457959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458013-2458655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245801 3-2458655 bp Feature: domain Description: GIIM Note: maturase Location: 2458709-2458952 bp Feature: domain Description: GIIM Note: maturase Location: 2458709-2458952 bp Feature: gene Location: 2459556-2459699 bp Ori: AGK20623.1 Feature: domain Description: IS5 Location: 2459568-2459673 bp Feature: domain Description: IS5 Location: 2459568-2459673 bp Feature: gene Location: 2460220-2461338 bp Ori: AGK20624.1 Feature: domain Description: NTP_transf_5 Location: 2460466-2461180 bp Feature: domain Description: NTP_transf_5 Location: 2460466-2461 1 80 bp Feature: gene Location: 2469956-2470285 bp Feature: gene Location: 2470406-2471359 bp Ori: AGK20635.1 Feature: domain Description: LysR Location: 2470415-2471297 bp Feature: domain Description: LysR Location: 247041 5-2471 297 bp Feature: gene Location: 2471475-2473250 bp Ori: AGK20636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2472189-2472879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24721 89-2472879 bp Feature: gene Location: 2473496-2474149 bp Ori: AGK20637.1 Feature: domain Description: PRK11053 Location: 2473502-2474144 bp Feature: domain Description: PRK1 1 053 Location: 2473502-24741 44 bp Feature: gene Location: 2474290-2475249 bp Ori: AGK20638.1 Feature: domain Description: LysR Location: 2474299-2475181 bp Feature: domain Description: LysR Location: 2474299-24751 81 bp Feature: gene Location: 2828231-2829889 bp Ori: AGK17728.1 Gene: cysI Feature: domain Description: CysI Location: 2828234-2829869 bp Feature: domain Description: CysI Location: 2828234-2829869 bp Feature: gene Location: 2829873-2830370 bp Ori: AGK20852.1 Feature: domain Description: COG3749 Location: 2829876-2830365 bp Feature: domain Description: COG3749 Location: 2829876-2830365 bp Feature: gene Location: 2830811-2831671 bp Ori: AGK20853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830976-2831588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2830976-2831 588 bp Feature: gene Location: 2832245-2833273 bp Ori: AGK20854.1 Feature: domain Description: PRK11778 Location: 2832260-2833244 bp Feature: domain Description: PRK1 1 778 Location: 2832260-2833244 bp Feature: gene Location: 2833307-2833384 bp Feature: gene Location: 4649697-4650338 bp Ori: AGK22092.1 Feature: domain Description: DDE_3 Location: 4649832-4650252 bp Feature: domain Description: DDE_3 Location: 4649832-4650252 bp Feature: gene Location: 4650950-4651387 bp Ori: AGK22093.1 Feature: domain Description: sCache_2 Location: 4651025-4651376 bp Feature: domain Description: sCache_2 Location: 4651 025-4651 376 bp Feature: gene Location: 4651648-4653015 bp Ori: AGK22094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651981-4652593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4651 981 -4652593 bp Feature: domain Description: GIIM Note: maturase Location: 4652653-4652869 bp Feature: domain Description: GIIM Note: maturase Location: 4652653-4652869 bp Feature: gene Location: 4653478-4655298 bp Ori: AGK18922.1 Gene: typA Feature: domain Description: PRK10218 Location: 4653481-4655290 bp Feature: domain Description: PRK1 021 8 Location: 4653481 -4655290 bp Feature: gene Location: 4655441-4656895 bp Ori: AGK18856.1 Gene: thiI Feature: domain Description: PRK01269 Location: 4655444-4656890 bp Feature: domain Description: PRK01 269 Location: 4655444-4656890 bp Feature: gene Location: 4677078-4678520 bp Ori: AGK22102.1 Feature: domain Description: PRK11649 Location: 4677426-4678479 bp Feature: domain Description: PRK1 1 649 Location: 4677426-4678479 bp Feature: gene Location: 4678548-4679642 bp Ori: AGK17552.1 Gene: anmK Feature: domain Description: AnmK Location: 4678557-4679640 bp Feature: domain Description: AnmK Location: 4678557-4679640 bp Feature: gene Location: 4679748-4681115 bp Ori: AGK22103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680081-4680693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680081 -4680693 bp Feature: domain Description: GIIM Note: maturase Location: 4680753-4680969 bp Feature: domain Description: GIIM Note: maturase Location: 4680753-4680969 bp Feature: gene Location: 4681566-4681916 bp Ori: AGK17825.1 Gene: erpA Feature: domain Description: PRK13623 Location: 4681587-4681914 bp Feature: domain Description: PRK1 3623 Location: 4681 587-4681 91 4 bp Feature: gene Location: 4682050-4683084 bp Ori: AGK17564.1 Gene: argC Feature: domain Description: argC Location: 4682053-4683082 bp Feature: domain Description: argC Location: 4682053-4683082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10839 (16S rRNA pseudouridine(516) synthase RsuA), HTH_32 (pfam13565), pepN (PRK14015), YgfH_subfam (TIGR03458)
DUF3144 (pfam11342), Peptidase_C39A (cd02549), DadA (COG0665), thrS (TIGR00418), IS5 (COG3039), NTP_transf_5 (pfam14907), LysR (COG0583), PRK11053 (oxygen-insensitive NAD(P)H nitroreductase), CysI (TIGR02041), COG3749 (Uncharacterized conserved protein, DUF934 family )
PRK11778 (putative inner membrane peptidase; Provisional), DDE_3 (pfam13358), sCache_2 (pfam17200), PRK10218 (translational GTPase TypA), PRK01269 (tRNA s(4)U8 sulfurtransferase; Provisional), PRK11649 (putative peptidase; Provisional), AnmK (pfam03702), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional), argC (TIGR01850)