myRT

myRT report for GCA_000389635.1_ASM38963v1

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Seq: CP003262.1 Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence (53393 bp)
Overview 1 RT 1: 5005-9491 bp Neighborhood of RT #1 [5005, 9565] DDE_Tnp_1 LbH_XAT RVT-GII GIIM Feature: gene Location: 5005-6426 bp Ori: AGK99591.1 Feature: domain Description: DDE_Tnp_1 Location: 5353-6151 bp Feature: domain Description: DDE_Tnp_1 Location: 5353-61 51 bp Feature: gene Location: 6845-7477 bp Ori: AGK99592.1 Feature: domain Description: LbH_XAT Location: 6932-7415 bp Feature: domain Description: LbH_XAT Location: 6932-741 5 bp Feature: gene Location: 8318-9565 bp Ori: AGK99593.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8522-9179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8522-91 79 bp Feature: domain Description: GIIM Note: maturase Location: 9260-9491 bp Feature: domain Description: GIIM Note: maturase Location: 9260-9491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), LbH_XAT (cd03349), RVT-GII, GIIM (pfam08388)

Seq: CP003261.1 Clostridium pasteurianum BC1, complete genome (4990707 bp)
Overview 1 RT 1: 433010-438046 bp 2 RT 2: 1568755-1575973 bp 3 RT 3: 1728207-1734707 bp 4 RT 4: 1743032-1747429 bp 5 RT 5: 1848940-1853550 bp 6 RT 6: 2703413-2708423 bp 7 RT 7: 3866911-3875053 bp 8 RT 8: 4831417-4847752 bp Neighborhood of RT #1 [433010, 438046] RVT-GII GIIM Neighborhood of RT #2 [1568755, 1575996] GrpB HTH_3 RVT-GII GIIM COG3837 PRK13566 Neighborhood of RT #3 [1728207, 1734718] RVT_N RVT-GII GIIM CwlT_like PRK13914 SHOCT Neighborhood of RT #4 [1743032, 1747443] HTH_XRE Acetyltransf_1 RVT-GII GIIM Cdd RacX Neighborhood of RT #5 [1848940, 1853558] WrbA INT_ICEBs1_C_like RVT_N RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [2703413, 2708423] HxlR Fer4 Fer4 NADH_nitroreductase RVT_N RVT-GII GIIM HNH DDE_Tnp_1 Neighborhood of RT #7 [3866911, 3875061] Ves KOG1803 KOG1803 DUF2726 RVT-GII GIIM DDE_Tnp_1 RacX Neighborhood of RT #8 [4831417, 4848081] MFS_MefA_like PolC RVT_N RVT-GII GIIM HNH DDE_Tnp_1 COG3666 DDE_Tnp_1_6 RVT-GII GIIM beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn Feature: gene Location: 433010-433837 bp Feature: gene Location: 434351-435646 bp Ori: AGK95484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434606-435296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434606-4352 96 bp Feature: domain Description: GIIM Note: maturase Location: 435356-435578 bp Feature: domain Description: GIIM Note: maturase Location: 435356-435578 bp Feature: gene Location: 436694-436912 bp Feature: gene Location: 437441-438046 bp Feature: gene Location: 1568755-1569267 bp Ori: AGK96470.1 Feature: domain Description: GrpB Location: 1568773-1569256 bp Feature: domain Description: GrpB Location: 1568773-15692 56 bp Feature: gene Location: 1569642-1570739 bp Ori: AGK96471.1 Feature: domain Description: HTH_3 Location: 1569663-1569819 bp Feature: domain Description: HTH_3 Location: 1569663-1569819 bp Feature: gene Location: 1571236-1572531 bp Ori: AGK96472.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1571491-1572181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1571491-1572 181 bp Feature: domain Description: GIIM Note: maturase Location: 1572241-1572463 bp Feature: domain Description: GIIM Note: maturase Location: 1572 2 41-1572 463 bp Feature: gene Location: 1572674-1573153 bp Ori: AGK96473.1 Feature: domain Description: COG3837 Location: 1572797-1573073 bp Feature: domain Description: COG3837 Location: 1572 797-1573073 bp Feature: gene Location: 1573810-1575996 bp Ori: AGK96474.1 Feature: domain Description: PRK13566 Location: 1573840-1575973 bp Feature: domain Description: PRK13566 Location: 1573840-1575973 bp Feature: gene Location: 1728207-1728482 bp Feature: gene Location: 1728483-1729103 bp Feature: gene Location: 1730530-1732203 bp Ori: AGK96615.1 Feature: domain Description: RVT_N Location: 1730602-1730845 bp Feature: domain Description: RVT_N Location: 1730602 -1730845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1730890-1731550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1730890-1731550 bp Feature: domain Description: GIIM Note: maturase Location: 1731604-1731838 bp Feature: domain Description: GIIM Note: maturase Location: 1731604-1731838 bp Feature: gene Location: 1733293-1734318 bp Ori: AGK96616.1 Feature: domain Description: CwlT_like Location: 1733485-1733893 bp Feature: domain Description: CwlT_like Location: 1733485-1733893 bp Feature: domain Description: PRK13914 Location: 1733953-1734307 bp Feature: domain Description: PRK13914 Location: 1733953-1734307 bp Feature: gene Location: 1734344-1734718 bp Ori: AGK96617.1 Feature: domain Description: SHOCT Location: 1734626-1734707 bp Feature: domain Description: SHOCT Location: 173462 6-1734707 bp Feature: gene Location: 1743032-1743502 bp Ori: AGK96627.1 Feature: domain Description: HTH_XRE Location: 1743266-1743428 bp Feature: domain Description: HTH_XRE Location: 17432 66-174342 8 bp Feature: gene Location: 1743717-1744145 bp Ori: AGK96628.1 Feature: domain Description: Acetyltransf_1 Location: 1743759-1744110 bp Feature: domain Description: Acetyltransf_1 Location: 1743759-1744110 bp Feature: gene Location: 1744385-1745680 bp Ori: AGK96629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744640-1745330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744640-1745330 bp Feature: domain Description: GIIM Note: maturase Location: 1745390-1745612 bp Feature: domain Description: GIIM Note: maturase Location: 1745390-1745612 bp Feature: gene Location: 1746189-1746605 bp Ori: AGK96630.1 Feature: domain Description: Cdd Location: 1746261-1746591 bp Feature: domain Description: Cdd Location: 17462 61-1746591 bp Feature: gene Location: 1746745-1747443 bp Ori: AGK96631.1 Feature: domain Description: RacX Location: 1746757-1747429 bp Feature: domain Description: RacX Location: 1746757-174742 9 bp Feature: gene Location: 1848940-1849089 bp Ori: AGK96714.1 Feature: domain Description: WrbA Location: 1848943-1849075 bp Feature: domain Description: WrbA Location: 1848943-1849075 bp Feature: gene Location: 1849639-1850238 bp Ori: AGK96715.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1849840-1850149 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1849840-1850149 bp Feature: gene Location: 1850619-1852157 bp Ori: AGK96716.1 Feature: domain Description: RVT_N Location: 1850691-1850934 bp Feature: domain Description: RVT_N Location: 1850691-1850934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850979-1851639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1850979-1851639 bp Feature: domain Description: GIIM Note: maturase Location: 1851693-1851927 bp Feature: domain Description: GIIM Note: maturase Location: 1851693-185192 7 bp Feature: gene Location: 1852702-1853250 bp Ori: AGK96717.1 Feature: domain Description: PHA02517 Location: 1852735-1853227 bp Feature: domain Description: PHA02 517 Location: 1852 735-18532 2 7 bp Feature: gene Location: 1853280-1853558 bp Ori: AGK96718.1 Feature: domain Description: InsE Location: 1853298-1853550 bp Feature: domain Description: InsE Location: 18532 98-1853550 bp Feature: gene Location: 2703413-2703772 bp Ori: AGK97537.1 Feature: domain Description: HxlR Location: 2703437-2703740 bp Feature: domain Description: HxlR Location: 2 703437-2 703740 bp Feature: gene Location: 2703964-2704770 bp Ori: AGK97538.1 Feature: domain Description: Fer4 Location: 2703976-2704042 bp Feature: domain Description: Fer4 Location: 2 703976-2 704042 bp Feature: domain Description: Fer4 Location: 2704084-2704132 bp Feature: domain Description: Fer4 Location: 2 704084-2 704132 bp Feature: domain Description: NADH_nitroreductase Location: 2704210-2704750 bp Feature: domain Description: NADH_nitroreductase Location: 2 7042 10-2 704750 bp Feature: gene Location: 2704976-2706772 bp Ori: AGK97539.1 Feature: domain Description: RVT_N Location: 2705030-2705276 bp Feature: domain Description: RVT_N Location: 2 705030-2 7052 76 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705330-2705993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 705330-2 705993 bp Feature: domain Description: GIIM Note: maturase Location: 2706056-2706290 bp Feature: domain Description: GIIM Note: maturase Location: 2 706056-2 7062 90 bp Feature: domain Description: HNH Note: nucleases Location: 2706527-2706665 bp Feature: domain Description: HNH Note: nucleases Location: 2 70652 7-2 706665 bp Feature: gene Location: 2707070-2708194 bp Ori: AGK97540.1 Feature: domain Description: DDE_Tnp_1 Location: 2707430-2708000 bp Feature: domain Description: DDE_Tnp_1 Location: 2 707430-2 708000 bp Feature: gene Location: 2708280-2708423 bp Feature: gene Location: 3866911-3867528 bp Ori: AGK98609.1 Feature: domain Description: Ves Location: 3866926-3867256 bp Feature: domain Description: Ves Location: 386692 6-38672 56 bp Feature: gene Location: 3867848-3870661 bp Ori: AGK98610.1 Feature: domain Description: KOG1803 Location: 3868277-3868859 bp Feature: domain Description: KOG1803 Location: 38682 77-3868859 bp Feature: domain Description: KOG1803 Location: 3869063-3870143 bp Feature: domain Description: KOG1803 Location: 3869063-3870143 bp Feature: domain Description: DUF2726 Location: 3870245-3870605 bp Feature: domain Description: DUF2 72 6 Location: 38702 45-3870605 bp Feature: gene Location: 3871106-3872401 bp Ori: AGK98611.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3871361-3872051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3871361-3872 051 bp Feature: domain Description: GIIM Note: maturase Location: 3872111-3872333 bp Feature: domain Description: GIIM Note: maturase Location: 3872 111-3872 333 bp Feature: gene Location: 3872777-3873901 bp Ori: AGK98612.1 Feature: domain Description: DDE_Tnp_1 Location: 3873137-3873707 bp Feature: domain Description: DDE_Tnp_1 Location: 3873137-3873707 bp Feature: gene Location: 3874366-3875061 bp Ori: AGK98613.1 Feature: domain Description: RacX Location: 3874369-3875053 bp Feature: domain Description: RacX Location: 3874369-3875053 bp Feature: gene Location: 4831417-4832673 bp Ori: AGK99447.1 Feature: domain Description: MFS_MefA_like Location: 4831483-4832662 bp Feature: domain Description: MFS_MefA_like Location: 4831483-4832 662 bp Feature: gene Location: 4832933-4837276 bp Ori: AGK99448.1 Feature: domain Description: PolC Location: 4832942-4837265 bp Feature: domain Description: PolC Location: 4832 942 -48372 65 bp Feature: gene Location: 4837801-4839582 bp Ori: AGK99449.1 Feature: domain Description: RVT_N Location: 4837855-4838101 bp Feature: domain Description: RVT_N Location: 4837855-4838101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4838155-4838818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4838155-4838818 bp Feature: domain Description: GIIM Note: maturase Location: 4838881-4839115 bp Feature: domain Description: GIIM Note: maturase Location: 4838881-4839115 bp Feature: domain Description: HNH Note: nucleases Location: 4839352-4839481 bp Feature: domain Description: HNH Note: nucleases Location: 4839352 -4839481 bp Feature: gene Location: 4840132-4841256 bp Ori: AGK99450.1 Feature: domain Description: DDE_Tnp_1 Location: 4840492-4841062 bp Feature: domain Description: DDE_Tnp_1 Location: 4840492 -4841062 bp Feature: gene Location: 4841785-4843236 bp Ori: AGK99451.1 Feature: domain Description: COG3666 Location: 4841809-4842274 bp Feature: domain Description: COG3666 Location: 4841809-4842 2 74 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4842829-4843177 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4842 82 9-4843177 bp Feature: gene Location: 4843338-4844582 bp Ori: AGK99452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4843542-4844199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4843542 -4844199 bp Feature: domain Description: GIIM Note: maturase Location: 4844280-4844493 bp Feature: domain Description: GIIM Note: maturase Location: 48442 80-4844493 bp Feature: gene Location: 4845502-4845894 bp Feature: gene Location: 4846648-4848081 bp Ori: AGK99454.1 Feature: domain Description: beta_rpt_yvtn Location: 4846795-4846888 bp Feature: domain Description: beta_rpt_yvtn Location: 4846795-4846888 bp Feature: domain Description: beta_rpt_yvtn Location: 4846972-4847089 bp Feature: domain Description: beta_rpt_yvtn Location: 4846972 -4847089 bp Feature: domain Description: beta_rpt_yvtn Location: 4847095-4847215 bp Feature: domain Description: beta_rpt_yvtn Location: 4847095-48472 15 bp Feature: domain Description: beta_rpt_yvtn Location: 4847221-4847311 bp Feature: domain Description: beta_rpt_yvtn Location: 48472 2 1-4847311 bp Feature: domain Description: beta_rpt_yvtn Location: 4847356-4847488 bp Feature: domain Description: beta_rpt_yvtn Location: 4847356-4847488 bp Feature: domain Description: beta_rpt_yvtn Location: 4847635-4847752 bp Feature: domain Description: beta_rpt_yvtn Location: 4847635-4847752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GrpB (pfam04229), HTH_3 (pfam01381), COG3837 (Uncharacterized conserved protein, cupin superfamily ), PRK13566 (anthranilate synthase component I), RVT_N (pfam13655), CwlT_like, PRK13914 (invasion associated endopeptidase), SHOCT (pfam09851)
HTH_XRE (smart00530), Acetyltransf_1 (pfam00583), Cdd (COG0295), RacX (COG1794), WrbA (COG0655), INT_ICEBs1_C_like (cd01189), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HxlR (pfam01638), Fer4 (pfam00037)
NADH_nitroreductase, HNH (pfam01844), DDE_Tnp_1 (pfam01609), Ves (COG3758), KOG1803 (KOG1803, DNA helicase ), DUF2726 (pfam10881), MFS_MefA_like (cd06173), PolC (COG2176), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)
beta_rpt_yvtn (TIGR02276)