myRT

myRT report for GCA_000397185.1_ASM39718v1

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Seq: CP002548.1 Strawberry lethal yellows phytoplasma (CPA) str. NZSb11, complete genome (959779 bp)
Overview 1 RT 1: 36248-40843 bp 2 RT 2: 47980-53281 bp 3 RT 3: 358757-364186 bp 4 RT 4: 632546-639826 bp 5 RT 5: 677433-683283 bp 6 RT 6: 697939-703835 bp Neighborhood of RT #1 [36248, 41028] SVM_signal RVT-GII Intron_maturas2 EDR1 ABC_SMC_barmotin Neighborhood of RT #2 [47980, 53304] HTH_23 PHA02517 RVT-GII Intron_maturas2 PHA02517 sigma70-ECF Neighborhood of RT #3 [358757, 364197] RVT-GII RVT-GII Intron_maturas2 PRK05563 YbaB_DNA_bd Neighborhood of RT #4 [632546, 639846] RVT-GII Intron_maturas2 gyrB PRK05560 Neighborhood of RT #5 [677433, 683288] acyl_carrier KOG4768 RVT-GII Intron_maturas2 leuS Neighborhood of RT #6 [697939, 703960] SVM_signal RVT-GII Intron_maturas2 KOG4674 Smc Smc SH3_and_anchor Feature: gene Location: 36248-36640 bp Ori: AGL89963.1 Feature: domain Description: SVM_signal Location: 36251-36344 bp Feature: domain Description: SVM_signal Location: 36251 -36344 bp Feature: gene Location: 36744-37547 bp Feature: gene Location: 37577-39334 bp Ori: AGL89965.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37862-38606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37862-38606 bp Feature: domain Description: Intron_maturas2 Location: 38741-38975 bp Feature: domain Description: Intron_maturas2 Location: 38741 -38975 bp Feature: gene Location: 39906-40265 bp Ori: AGL89966.1 Feature: domain Description: EDR1 Location: 39978-40227 bp Feature: domain Description: EDR1 Location: 39978-40227 bp Feature: gene Location: 40348-41028 bp Ori: AGL89967.1 Feature: domain Description: ABC_SMC_barmotin Location: 40390-40843 bp Feature: domain Description: ABC_SMC_barmotin Location: 40390-40843 bp Feature: gene Location: 47980-48759 bp Feature: gene Location: 48894-49868 bp Ori: AGL89976.1 Gene: tra5 Feature: domain Description: HTH_23 Location: 48936-49074 bp Feature: domain Description: HTH_23 Location: 48936-49074 bp Feature: domain Description: PHA02517 Location: 49245-49836 bp Feature: domain Description: PHA0251 7 Location: 49245-49836 bp Feature: gene Location: 50440-52185 bp Ori: AGL89977.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50725-51457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50725-51 457 bp Feature: domain Description: Intron_maturas2 Location: 51592-51826 bp Feature: domain Description: Intron_maturas2 Location: 51 592-51 826 bp Feature: gene Location: 52215-52550 bp Ori: AGL89978.1 Gene: tra5 Feature: domain Description: PHA02517 Location: 52314-52515 bp Feature: domain Description: PHA0251 7 Location: 5231 4-5251 5 bp Feature: gene Location: 52651-53304 bp Ori: AGL89979.1 Gene: rpoD Feature: domain Description: sigma70-ECF Location: 52708-53281 bp Feature: domain Description: sigma70-ECF Location: 52708-53281 bp Feature: gene Location: 358757-358933 bp Feature: gene Location: 359030-359134 bp Feature: gene Location: 360064-360465 bp Ori: AGL90351.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360349-360463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360349-360463 bp Feature: gene Location: 360604-361809 bp Ori: AGL90352.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360610-361081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36061 0-361 081 bp Feature: domain Description: Intron_maturas2 Location: 361216-361450 bp Feature: domain Description: Intron_maturas2 Location: 361 21 6-361 450 bp Feature: gene Location: 362082-363890 bp Ori: AGL90353.1 Gene: dnaX Feature: domain Description: PRK05563 Location: 362094-363882 bp Feature: domain Description: PRK05563 Location: 362094-363882 bp Feature: gene Location: 363913-364197 bp Ori: AGL90354.1 Feature: domain Description: YbaB_DNA_bd Location: 363940-364186 bp Feature: domain Description: YbaB_DNA_bd Location: 363940-3641 86 bp Feature: gene Location: 632546-632650 bp Feature: gene Location: 632886-633062 bp Feature: gene Location: 633384-635039 bp Ori: AGL90661.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633579-634311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633579-63431 1 bp Feature: domain Description: Intron_maturas2 Location: 634446-634680 bp Feature: domain Description: Intron_maturas2 Location: 634446-634680 bp Feature: gene Location: 635349-637337 bp Ori: AGL90662.1 Gene: gyrB Feature: domain Description: gyrB Location: 635355-637335 bp Feature: domain Description: gyrB Location: 635355-637335 bp Feature: gene Location: 637387-639846 bp Ori: AGL90663.1 Gene: gyrA Feature: domain Description: PRK05560 Location: 637417-639826 bp Feature: domain Description: PRK05560 Location: 63741 7-639826 bp Feature: gene Location: 677433-677663 bp Ori: AGL90707.1 Gene: acpP Feature: domain Description: acyl_carrier Location: 677439-677655 bp Feature: domain Description: acyl_carrier Location: 677439-677655 bp Feature: gene Location: 677940-678227 bp Ori: AGL90708.1 Gene: ltrA Feature: domain Description: KOG4768 Location: 677949-678177 bp Feature: domain Description: KOG4768 Location: 677949-6781 77 bp Feature: gene Location: 678265-679686 bp Ori: AGL90709.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678550-679282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678550-679282 bp Feature: domain Description: Intron_maturas2 Location: 679417-679630 bp Feature: domain Description: Intron_maturas2 Location: 67941 7-679630 bp Feature: gene Location: 680361-680462 bp Feature: gene Location: 680844-683288 bp Ori: AGL90711.1 Gene: leuS Feature: domain Description: leuS Location: 680859-683283 bp Feature: domain Description: leuS Location: 680859-683283 bp Feature: gene Location: 697939-698304 bp Ori: AGL90727.1 Feature: domain Description: SVM_signal Location: 697951-698035 bp Feature: domain Description: SVM_signal Location: 697951 -698035 bp Feature: gene Location: 698324-699172 bp Feature: gene Location: 699202-700947 bp Ori: AGL90729.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699487-700219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699487-70021 9 bp Feature: domain Description: Intron_maturas2 Location: 700354-700588 bp Feature: domain Description: Intron_maturas2 Location: 700354-700588 bp Feature: gene Location: 701519-701911 bp Ori: AGL90730.1 Feature: domain Description: KOG4674 Location: 701600-701831 bp Feature: domain Description: KOG4674 Location: 701 600-701 831 bp Feature: gene Location: 701993-703960 bp Ori: AGL90731.1 Feature: domain Description: Smc Location: 701999-702563 bp Feature: domain Description: Smc Location: 701 999-702563 bp Feature: domain Description: Smc Location: 702911-703202 bp Feature: domain Description: Smc Location: 70291 1 -703202 bp Feature: domain Description: SH3_and_anchor Location: 703520-703835 bp Feature: domain Description: SH3_and_anchor Location: 703520-703835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SVM_signal (pfam12113), RVT-GII, Intron_maturas2 (pfam01348), EDR1 (pfam14381), ABC_SMC_barmotin (cd03278), HTH_23 (pfam13384), PHA02517 (putative transposase OrfB; Reviewed), sigma70-ECF (TIGR02937), PRK05563 (DNA polymerase III subunits gamma and tau; Validated), YbaB_DNA_bd (pfam02575)
gyrB (TIGR01059), PRK05560 (DNA gyrase subunit A; Validated), acyl_carrier (TIGR00517), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), leuS (PRK12300), KOG4674 (KOG4674, Uncharacterized conserved coiled-coil protein ), Smc (COG1196), SH3_and_anchor (TIGR04211)