myRT

myRT report for GCA_000406765.2_ASM40676v2

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Seq: CP011980.1 Klebsiella pneumoniae 500_1420, complete genome (5308211 bp)
Overview 1 RT 1: 1748238-1754709 bp 2 RT 2: 3106397-3111761 bp 3 RT 3: 3491587-3497141 bp 4 RT 4: 3936200-3939652 bp Neighborhood of RT #1 [1748238, 1754723] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3106397, 3111817] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #3 [3491587, 3497161] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #4 [3936200, 3939708] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 1748238-1749662 bp Ori: AKR88538.1 Gene: sbcB Feature: domain Description: SbcB Location: 1748244-1749660 bp Feature: domain Description: SbcB Location: 1 748244-1 749660 bp Feature: gene Location: 1749843-1751006 bp Ori: AKR91968.1 Feature: domain Description: dacD Location: 1749846-1751001 bp Feature: domain Description: dacD Location: 1 749846-1 751 001 bp Feature: gene Location: 1751527-1753011 bp Ori: AKR88539.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1751929-1752619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 751 929-1 75261 9 bp Feature: gene Location: 1753093-1753566 bp Ori: AKR88540.1 Feature: domain Description: PRK10016 Location: 1753096-1753555 bp Feature: domain Description: PRK1 001 6 Location: 1 753096-1 753555 bp Feature: gene Location: 1753665-1754723 bp Ori: AKR88541.1 Feature: domain Description: YccC Location: 1753671-1754709 bp Feature: domain Description: YccC Location: 1 753671 -1 754709 bp Feature: gene Location: 3106397-3107662 bp Ori: AKR89856.1 Feature: domain Description: umuC Location: 3106400-3107660 bp Feature: domain Description: umuC Location: 31 06400-31 07660 bp Feature: gene Location: 3107665-3108084 bp Ori: AKR89857.1 Feature: domain Description: PRK10276 Location: 3107668-3108079 bp Feature: domain Description: PRK1 0276 Location: 31 07668-31 08079 bp Feature: gene Location: 3108163-3109647 bp Ori: AKR89858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3108565-3109255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 08565-31 09255 bp Feature: gene Location: 3110265-3110507 bp Ori: AKR89859.1 Feature: domain Description: DinI Location: 3110316-3110496 bp Feature: domain Description: DinI Location: 31 1 031 6-31 1 0496 bp Feature: gene Location: 3110678-3111817 bp Ori: AKR89860.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3110861-3111761 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 31 1 0861 -31 1 1 761 bp Feature: gene Location: 3491587-3492465 bp Ori: AKR90226.1 Feature: domain Description: Phage_CI_repr Location: 3491614-3491797 bp Feature: domain Description: Phage_CI_repr Location: 3491 61 4-3491 797 bp Feature: domain Description: Phage_CI_repr Location: 3491926-3492118 bp Feature: domain Description: Phage_CI_repr Location: 3491 926-34921 1 8 bp Feature: domain Description: Phage_CI_C Location: 3492145-3492439 bp Feature: domain Description: Phage_CI_C Location: 34921 45-3492439 bp Feature: gene Location: 3492477-3493421 bp Feature: gene Location: 3493520-3495004 bp Ori: AKR90228.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3493922-3494612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3493922-349461 2 bp Feature: gene Location: 3495423-3496475 bp Ori: AKR90229.1 Feature: domain Description: int Location: 3495426-3496425 bp Feature: domain Description: int Location: 3495426-3496425 bp Feature: gene Location: 3496598-3497161 bp Ori: AKR90230.1 Feature: domain Description: YbjK Location: 3496604-3497141 bp Feature: domain Description: YbjK Location: 3496604-34971 41 bp Feature: gene Location: 3936200-3936517 bp Ori: AKR90627.1 Feature: domain Description: PRK10276 Location: 3936206-3936320 bp Feature: domain Description: PRK1 0276 Location: 3936206-3936320 bp Feature: domain Description: PRK10276 Location: 3936347-3936416 bp Feature: domain Description: PRK1 0276 Location: 3936347-393641 6 bp Feature: gene Location: 3936517-3936756 bp Feature: gene Location: 3936834-3938318 bp Ori: AKR90629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937236-3937926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3937236-3937926 bp Feature: gene Location: 3938771-3938980 bp Feature: gene Location: 3938977-3939708 bp Ori: AKR90631.1 Feature: domain Description: Laminin_G_3 Location: 3939298-3939652 bp Feature: domain Description: Laminin_G_3 Location: 3939298-3939652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022)
Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), Laminin_G_3 (pfam13385)