myRT

myRT report for GCA_000410575.1_ASM41057v1

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Seq: CP005976.1 Pseudomonas putida H8234, complete genome (6870827 bp)
Overview 1 RT 1: 3195951-3201079 bp 2 RT 2: 3241683-3247536 bp 3 RT 3: 3518989-3524347 bp 4 RT 4: 3531594-3537865 bp 5 RT 5: 4483394-4489640 bp Neighborhood of RT #1 [3195951, 3201079] RVT-GII GIIM StbC Neighborhood of RT #2 [3241683, 3247553] LT_IagB_like SLR SLR RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #3 [3518989, 3524347] Tra5 HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM DUF4096 MDR7 Neighborhood of RT #4 [3531594, 3537897] CaiB PRK13348 PBP2_LTTR_like_1 RVT-Retrons MFS_MucK Neighborhood of RT #5 [4483394, 4489654] AhpC PRK06116 RVT-GII GIIM galU CytC Feature: gene Location: 3195951-3196523 bp Feature: gene Location: 3196649-3197134 bp Feature: gene Location: 3198114-3198980 bp Ori: AGN82252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3198117-3198528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 981 1 7-31 98528 bp Feature: domain Description: GIIM Note: maturase Location: 3198585-3198798 bp Feature: domain Description: GIIM Note: maturase Location: 31 98585-31 98798 bp Feature: gene Location: 3199173-3200054 bp Ori: AGN82253.1 Feature: domain Description: StbC Location: 3199176-3199323 bp Feature: domain Description: StbC Location: 31 991 76-31 99323 bp Feature: gene Location: 3200420-3201079 bp Feature: gene Location: 3241683-3242114 bp Ori: AGN82294.1 Feature: domain Description: LT_IagB_like Location: 3241782-3242103 bp Feature: domain Description: LT_IagB_like Location: 3241 782-32421 03 bp Feature: gene Location: 3242163-3243122 bp Ori: AGN82295.1 Feature: domain Description: SLR Location: 3242394-3242643 bp Feature: domain Description: SLR Location: 3242394-3242643 bp Feature: domain Description: SLR Location: 3242676-3242934 bp Feature: domain Description: SLR Location: 3242676-3242934 bp Feature: gene Location: 3243350-3244636 bp Ori: AGN82296.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3243554-3244244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3243554-3244244 bp Feature: gene Location: 3245619-3245954 bp Ori: AGN82297.1 Feature: domain Description: TnpB_IS66 Location: 3245637-3245925 bp Feature: domain Description: TnpB_IS66 Location: 3245637-3245925 bp Feature: gene Location: 3246018-3247553 bp Ori: AGN82298.1 Feature: domain Description: LZ_Tnp_IS66 Location: 3246159-3246372 bp Feature: domain Description: LZ_Tnp_IS66 Location: 32461 59-3246372 bp Feature: domain Description: zf-IS66 Location: 3246393-3246519 bp Feature: domain Description: zf-IS66 Location: 3246393-324651 9 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3246561-3247404 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3246561 -3247404 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3247425-3247536 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3247425-3247536 bp Feature: gene Location: 3518989-3519891 bp Ori: AGN82535.1 Feature: domain Description: Tra5 Location: 3519097-3519748 bp Feature: domain Description: Tra5 Location: 351 9097-351 9748 bp Feature: gene Location: 3519888-3520343 bp Ori: AGN82536.1 Feature: domain Description: HTH_Tnp_1 Location: 3519909-3520005 bp Feature: domain Description: HTH_Tnp_1 Location: 351 9909-3520005 bp Feature: domain Description: HTH_Tnp_1 Location: 3520026-3520251 bp Feature: domain Description: HTH_Tnp_1 Location: 3520026-3520251 bp Feature: gene Location: 3520749-3522074 bp Ori: AGN82537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521010-3521625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521 01 0-3521 625 bp Feature: domain Description: GIIM Note: maturase Location: 3521682-3521895 bp Feature: domain Description: GIIM Note: maturase Location: 3521 682-3521 895 bp Feature: gene Location: 3522761-3523861 bp Ori: AGN79155.1 Feature: domain Description: DUF4096 Location: 3522764-3522848 bp Feature: domain Description: DUF4096 Location: 3522764-3522848 bp Feature: domain Description: MDR7 Location: 3522935-3523856 bp Feature: domain Description: MDR7 Location: 3522935-3523856 bp Feature: gene Location: 3523922-3524347 bp Feature: gene Location: 3531594-3532799 bp Ori: AGN79159.1 Feature: domain Description: CaiB Location: 3531624-3532797 bp Feature: domain Description: CaiB Location: 3531 624-3532797 bp Feature: gene Location: 3532971-3533891 bp Ori: AGN82545.1 Feature: domain Description: PRK13348 Location: 3532983-3533193 bp Feature: domain Description: PRK1 3348 Location: 3532983-35331 93 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 3533256-3533847 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 3533256-3533847 bp Feature: gene Location: 3534842-3535585 bp Ori: AGN82546.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3534845-3535313 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3534845-353531 3 bp Feature: gene Location: 3536003-3536140 bp Feature: gene Location: 3536578-3537897 bp Ori: AGN82548.1 Feature: domain Description: MFS_MucK Location: 3536674-3537865 bp Feature: domain Description: MFS_MucK Location: 3536674-3537865 bp Feature: gene Location: 4483394-4483957 bp Ori: AGN79633.1 Feature: domain Description: AhpC Location: 4483397-4483955 bp Feature: domain Description: AhpC Location: 4483397-4483955 bp Feature: gene Location: 4484224-4485579 bp Ori: AGN79634.1 Feature: domain Description: PRK06116 Location: 4484227-4485565 bp Feature: domain Description: PRK061 1 6 Location: 4484227-4485565 bp Feature: gene Location: 4485702-4487027 bp Ori: AGN82989.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4485963-4486578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4485963-4486578 bp Feature: domain Description: GIIM Note: maturase Location: 4486635-4486860 bp Feature: domain Description: GIIM Note: maturase Location: 4486635-4486860 bp Feature: gene Location: 4487599-4488438 bp Ori: AGN79635.1 Feature: domain Description: galU Location: 4487608-4488391 bp Feature: domain Description: galU Location: 4487608-4488391 bp Feature: gene Location: 4488737-4489654 bp Ori: AGN79636.1 Feature: domain Description: CytC Location: 4488854-4489640 bp Feature: domain Description: CytC Location: 4488854-4489640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), StbC (COG4691), LT_IagB_like, SLR (sd00010), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527), DUF4096 (pfam13340), MDR7 (cd08276), CaiB (COG1804), PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421), RVT-Retrons, MFS_MucK (cd17371), AhpC (TIGR03137)
PRK06116 (glutathione reductase; Validated), galU (TIGR01099), CytC (COG3258)