myRT

myRT report for GCA_000417225.2_ASM41722v2

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Seq: CP011977.1 Klebsiella pneumoniae DMC1097 plasmid pDMC1097-218.836kb, complete sequence (218836 bp)
Overview 1 RT 1: 155482-160476 bp Neighborhood of RT #1 [155482, 160478] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 155482-156753 bp Ori: AKR86726.1 Feature: domain Description: umuC Location: 155485-156748 bp Feature: domain Description: umuC Location: 1 55485-1 56748 bp Feature: gene Location: 156753-157178 bp Ori: AKR86727.1 Feature: domain Description: PRK10276 Location: 156756-157164 bp Feature: domain Description: PRK1 0276 Location: 1 56756-1 571 64 bp Feature: gene Location: 157584-159068 bp Ori: AKR86728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157986-158676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57986-1 58676 bp Feature: gene Location: 159302-159532 bp Feature: gene Location: 160053-160478 bp Ori: AKR86730.1 Feature: domain Description: Antirestrict Location: 160188-160476 bp Feature: domain Description: Antirestrict Location: 1 601 88-1 60476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: CP011976.1 Klebsiella pneumoniae DMC1097, complete genome (5393855 bp)
Overview 1 RT 1: 1374177-1377345 bp 2 RT 2: 1821769-1828240 bp 3 RT 3: 3138429-3144147 bp 4 RT 4: 3228037-3233401 bp 5 RT 5: 3301889-3307563 bp 6 RT 6: 3625278-3630832 bp Neighborhood of RT #1 [1374177, 1377419] RVT-GII Terminase_2 Neighborhood of RT #2 [1821769, 1828254] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3138429, 3144152] LexA_DNA_bind PRK10597 RVT-GII DUF4209 HTH_ICLR PerC Neighborhood of RT #4 [3228037, 3233457] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3301889, 3307637] LexA_DNA_bind PRK10597 RVT-GII YncE YncE RutF Neighborhood of RT #6 [3625278, 3630852] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1374177-1374515 bp Feature: gene Location: 1374428-1374619 bp Feature: gene Location: 1374612-1376096 bp Ori: AKR82632.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375014-1375704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375014-1375704 bp Feature: gene Location: 1376500-1376757 bp Feature: gene Location: 1376835-1377419 bp Ori: AKR82633.1 Feature: domain Description: Terminase_2 Location: 1376880-1377345 bp Feature: domain Description: Terminase_2 Location: 1376880-1377345 bp Feature: gene Location: 1821769-1823193 bp Ori: AKR83014.1 Gene: sbcB Feature: domain Description: SbcB Location: 1821775-1823191 bp Feature: domain Description: SbcB Location: 182 1775-182 3191 bp Feature: gene Location: 1823374-1824537 bp Ori: AKR86424.1 Feature: domain Description: dacD Location: 1823377-1824532 bp Feature: domain Description: dacD Location: 182 3377-182 4532 bp Feature: gene Location: 1825058-1826542 bp Ori: AKR83015.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1825460-1826150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 5460-182 6150 bp Feature: gene Location: 1826624-1827097 bp Ori: AKR83016.1 Feature: domain Description: PRK10016 Location: 1826627-1827086 bp Feature: domain Description: PRK10016 Location: 182 662 7-182 7086 bp Feature: gene Location: 1827196-1828254 bp Ori: AKR83017.1 Feature: domain Description: YccC Location: 1827202-1828240 bp Feature: domain Description: YccC Location: 182 72 02 -182 82 40 bp Feature: gene Location: 3138429-3138821 bp Ori: AKR84286.1 Feature: domain Description: LexA_DNA_bind Location: 3138507-3138696 bp Feature: domain Description: LexA_DNA_bind Location: 3138507-3138696 bp Feature: gene Location: 3139164-3139397 bp Ori: AKR84287.1 Feature: domain Description: PRK10597 Location: 3139167-3139392 bp Feature: domain Description: PRK10597 Location: 3139167-3139392 bp Feature: gene Location: 3139476-3140960 bp Ori: AKR84288.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3139878-3140568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3139878-3140568 bp Feature: gene Location: 3141719-3143506 bp Ori: AKR84289.1 Feature: domain Description: DUF4209 Location: 3143171-3143441 bp Feature: domain Description: DUF42 09 Location: 3143171-3143441 bp Feature: gene Location: 3143715-3144152 bp Ori: AKR84290.1 Feature: domain Description: HTH_ICLR Location: 3143739-3143895 bp Feature: domain Description: HTH_ICLR Location: 3143739-3143895 bp Feature: domain Description: PerC Location: 3144012-3144147 bp Feature: domain Description: PerC Location: 3144012 -3144147 bp Feature: gene Location: 3228037-3229302 bp Ori: AKR84374.1 Feature: domain Description: umuC Location: 3228040-3229300 bp Feature: domain Description: umuC Location: 32 2 8040-32 2 9300 bp Feature: gene Location: 3229305-3229724 bp Ori: AKR84375.1 Feature: domain Description: PRK10276 Location: 3229308-3229719 bp Feature: domain Description: PRK102 76 Location: 32 2 9308-32 2 9719 bp Feature: gene Location: 3229803-3231287 bp Ori: AKR84376.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3230205-3230895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 302 05-32 30895 bp Feature: gene Location: 3231905-3232147 bp Ori: AKR84377.1 Feature: domain Description: DinI Location: 3231956-3232136 bp Feature: domain Description: DinI Location: 32 31956-32 32 136 bp Feature: gene Location: 3232318-3233457 bp Ori: AKR84378.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3232501-3233401 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32 32 501-32 33401 bp Feature: gene Location: 3301889-3302218 bp Ori: AKR86491.1 Feature: domain Description: LexA_DNA_bind Location: 3301904-3302093 bp Feature: domain Description: LexA_DNA_bind Location: 3301904-3302 093 bp Feature: gene Location: 3302624-3302857 bp Ori: AKR84447.1 Feature: domain Description: PRK10597 Location: 3302627-3302852 bp Feature: domain Description: PRK10597 Location: 3302 62 7-3302 852 bp Feature: gene Location: 3302936-3304420 bp Ori: AKR84448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303338-3304028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303338-330402 8 bp Feature: gene Location: 3305422-3306783 bp Ori: AKR84449.1 Feature: domain Description: YncE Location: 3305833-3306238 bp Feature: domain Description: YncE Location: 3305833-33062 38 bp Feature: domain Description: YncE Location: 3306310-3306727 bp Feature: domain Description: YncE Location: 3306310-330672 7 bp Feature: gene Location: 3307065-3307637 bp Ori: AKR84450.1 Feature: domain Description: RutF Location: 3307116-3307563 bp Feature: domain Description: RutF Location: 3307116-3307563 bp Feature: gene Location: 3625278-3626156 bp Ori: AKR86507.1 Feature: domain Description: Phage_CI_repr Location: 3625305-3625488 bp Feature: domain Description: Phage_CI_repr Location: 362 5305-362 5488 bp Feature: domain Description: Phage_CI_repr Location: 3625617-3625809 bp Feature: domain Description: Phage_CI_repr Location: 362 5617-362 5809 bp Feature: domain Description: Phage_CI_C Location: 3625836-3626130 bp Feature: domain Description: Phage_CI_C Location: 362 5836-362 6130 bp Feature: gene Location: 3626168-3627112 bp Feature: gene Location: 3627211-3628695 bp Ori: AKR84744.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3627613-3628303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 7613-362 8303 bp Feature: gene Location: 3629114-3630166 bp Ori: AKR84745.1 Feature: domain Description: int Location: 3629117-3630116 bp Feature: domain Description: int Location: 362 9117-3630116 bp Feature: gene Location: 3630289-3630852 bp Ori: AKR84746.1 Feature: domain Description: YbjK Location: 3630295-3630832 bp Feature: domain Description: YbjK Location: 36302 95-3630832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Terminase_2 (pfam03592), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional), DUF4209 (pfam13910), HTH_ICLR (smart00346)
PerC (pfam06069), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), YncE (COG3391), RutF (TIGR03615), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)
YbjK (COG3226)