myRT

myRT report for GCA_000418325.1_ASM41832v1

Download annotations/find similar RTs

Seq: CP003969.1 Sorangium cellulosum So0157-2, complete genome (14782125 bp)
Overview 1 RT 1: 1625319-1629054 bp 2 RT 2: 3183695-3189298 bp 3 RT 3: 3235528-3241342 bp 4 RT 4: 8123088-8129257 bp 5 RT 5: 13777688-13784437 bp Neighborhood of RT #1 [1625319, 1629503] GDB1 Tas RVT-GII Neighborhood of RT #2 [3183695, 3189495] PAS_4 PAS_4 STAS_RsbR_RsbS_like RVT-Retrons COG4715 Neighborhood of RT #3 [3235528, 3241863] PGRP FlgJ ExeA RVT-GII GIIM AAA_22 HTH_32 rve Neighborhood of RT #4 [8123088, 8129257] RVT-GII GIIM OPT Neighborhood of RT #5 [13777688, 13784437] SWIM RVT-Retrons Feature: gene Location: 1625319-1627361 bp Ori: AGP34037.1 Feature: domain Description: GDB1 Location: 1625361-1627245 bp Feature: domain Description: GDB1 Location: 1 625361 -1 627245 bp Feature: gene Location: 1627426-1628355 bp Ori: AGP32129.1 Feature: domain Description: Tas Location: 1627441-1628281 bp Feature: domain Description: Tas Location: 1 627441 -1 628281 bp Feature: gene Location: 1628442-1629503 bp Ori: AGP34038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628448-1629054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 628448-1 629054 bp Feature: gene Location: 3183695-3184861 bp Ori: AGP35098.1 Feature: domain Description: PAS_4 Location: 3183698-3183791 bp Feature: domain Description: PAS_4 Location: 31 83698-31 83791 bp Feature: domain Description: PAS_4 Location: 3184040-3184361 bp Feature: domain Description: PAS_4 Location: 31 84040-31 84361 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 3184514-3184838 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 31 8451 4-31 84838 bp Feature: gene Location: 3185200-3185649 bp Feature: gene Location: 3185712-3187187 bp Ori: AGP32234.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3186267-3186927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 86267-31 86927 bp Feature: gene Location: 3187594-3189495 bp Ori: AGP32235.1 Feature: domain Description: COG4715 Location: 3189085-3189298 bp Feature: domain Description: COG471 5 Location: 31 89085-31 89298 bp Feature: gene Location: 3235528-3236988 bp Ori: AGP35123.1 Feature: domain Description: PGRP Location: 3236362-3236473 bp Feature: domain Description: PGRP Location: 3236362-3236473 bp Feature: domain Description: FlgJ Location: 3236629-3236974 bp Feature: domain Description: FlgJ Location: 3236629-3236974 bp Feature: gene Location: 3237469-3237798 bp Ori: AGP35124.1 Feature: domain Description: ExeA Location: 3237475-3237757 bp Feature: domain Description: ExeA Location: 3237475-3237757 bp Feature: gene Location: 3237922-3239106 bp Ori: AGP35125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237925-3238648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237925-3238648 bp Feature: domain Description: GIIM Note: maturase Location: 3238723-3238927 bp Feature: domain Description: GIIM Note: maturase Location: 3238723-3238927 bp Feature: gene Location: 3239993-3240508 bp Ori: AGP35126.1 Feature: domain Description: AAA_22 Location: 3240137-3240446 bp Feature: domain Description: AAA_22 Location: 32401 37-3240446 bp Feature: gene Location: 3240505-3241863 bp Ori: AGP35127.1 Feature: domain Description: HTH_32 Location: 3240685-3240913 bp Feature: domain Description: HTH_32 Location: 3240685-324091 3 bp Feature: domain Description: rve Location: 3240991-3241342 bp Feature: domain Description: rve Location: 3240991 -3241 342 bp Feature: gene Location: 8123088-8123510 bp Feature: gene Location: 8123773-8124384 bp Feature: gene Location: 8124554-8125921 bp Ori: AGP38056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8124806-8125421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 24806-81 25421 bp Feature: domain Description: GIIM Note: maturase Location: 8125487-8125694 bp Feature: domain Description: GIIM Note: maturase Location: 81 25487-81 25694 bp Feature: gene Location: 8126691-8128736 bp Ori: AGP38057.1 Feature: domain Description: OPT Location: 8126793-8128650 bp Feature: domain Description: OPT Location: 81 26793-81 28650 bp Feature: gene Location: 8128844-8129257 bp Feature: gene Location: 13777688-13779397 bp Feature: gene Location: 13779394-13781181 bp Ori: AGP41758.1 Feature: domain Description: SWIM Location: 13781020-13781104 bp Feature: domain Description: SWIM Location: 1 3781 020-1 3781 1 04 bp Feature: gene Location: 13781450-13783069 bp Ori: AGP32968.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13782224-13782833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3782224-1 3782833 bp Feature: gene Location: 13783439-13783900 bp Feature: gene Location: 13783937-13784437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDB1 (COG3408), Tas (COG0667), RVT-GII, PAS_4 (pfam08448), STAS_RsbR_RsbS_like (cd07041), RVT-Retrons, COG4715 (Uncharacterized conserved protein, contains Zn finger domain ), PGRP (smart00701), FlgJ (COG1705), ExeA (COG3267)
GIIM (pfam08388), AAA_22 (pfam13401), HTH_32 (pfam13565), rve (pfam00665), OPT (pfam03169), SWIM (pfam04434)