myRT

myRT report for GCA_000430405.1_ASM43040v1

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Seq: CP006005.1 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome II, complete sequence (1861334 bp)
Overview 1 RT 1: 633972-644776 bp Neighborhood of RT #1 [633972, 644776] HTH_XRE RVT-Retrons RVT-UG1 Feature: gene Location: 633972-634151 bp Feature: gene Location: 634203-634487 bp Ori: AGQ93943.1 Feature: domain Description: HTH_XRE Location: 634215-634380 bp Feature: domain Description: HTH_XRE Location: 63421 5-634380 bp Feature: gene Location: 634484-635428 bp Ori: AGQ93944.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 634619-635192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63461 9-6351 92 bp Feature: gene Location: 635681-636325 bp Feature: gene Location: 636537-637805 bp Feature: gene Location: 639164-639448 bp Feature: gene Location: 639445-639633 bp Feature: gene Location: 640007-643852 bp Ori: AGQ93950.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 640649-641168 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 640649-641 1 68 bp Feature: gene Location: 643849-644352 bp Feature: gene Location: 644573-644776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, RVT-UG1

Seq: CP006004.1 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome I, complete sequence (3362228 bp)
Overview 1 RT 1: 772241-776037 bp 2 RT 2: 2655330-2660853 bp Neighborhood of RT #1 [772241, 776037] AlpA RVT-Retrons Neighborhood of RT #2 [2655330, 2660990] RVT-Retrons SLATT_5 SIR2_2 Feature: gene Location: 772241-772435 bp Ori: AGQ91961.1 Feature: domain Description: AlpA Location: 772250-772406 bp Feature: domain Description: AlpA Location: 772 2 50-772 406 bp Feature: gene Location: 772581-773333 bp Feature: gene Location: 773379-774344 bp Ori: AGQ91963.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 773484-774066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 773484-774066 bp Feature: gene Location: 774346-775350 bp Feature: gene Location: 775714-776037 bp Feature: gene Location: 2655330-2655860 bp Feature: gene Location: 2656775-2657665 bp Feature: gene Location: 2657834-2658793 bp Ori: AGQ92410.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2657987-2658542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 657987-2 658542 bp Feature: gene Location: 2659187-2659753 bp Ori: AGQ92411.1 Feature: domain Description: SLATT_5 Location: 2659298-2659577 bp Feature: domain Description: SLATT_5 Location: 2 6592 98-2 659577 bp Feature: gene Location: 2659800-2660990 bp Ori: AGQ92412.1 Feature: domain Description: SIR2_2 Location: 2660214-2660853 bp Feature: domain Description: SIR2 _2 Location: 2 6602 14-2 660853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-Retrons, SLATT_5 (pfam18160), SIR2_2 (pfam13289)