myRT

myRT report for GCA_000463015.1_ASM46301v1

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Seq: CP003911.1 Variovorax paradoxus B4 chromosome 1, complete sequence (5795261 bp)
Overview 1 RT 1: 985145-991339 bp 2 RT 2: 1155777-1160558 bp 3 RT 3: 1742804-1746446 bp 4 RT 4: 3399702-3403586 bp 5 RT 5: 4290502-4296686 bp 6 RT 6: 4694678-4700063 bp Neighborhood of RT #1 [985145, 991386] URH1 PBP2_TRAP_DctP10 RVT-GII DctQ DctM Neighborhood of RT #2 [1155777, 1160617] PRK11139 DUF2917 RVT-GII RVT-GII RVT-GII GIIM BLUF Crp Neighborhood of RT #3 [1742804, 1746446] PRK12828 RVT-GII GIIM Neighborhood of RT #4 [3399702, 3403804] Nnt1 RVT-GII GIIM CxxC_CxxC_SSSS Neighborhood of RT #5 [4290502, 4296703] Nramp HTH_1 PBP2_DntR_NahR_LinR_like RVT-GII YliI CytC553 CytC553 Neighborhood of RT #6 [4694678, 4700063] LysR RVT-Retrons Trypsin_2 Feature: gene Location: 985145-986083 bp Ori: AGU48012.1 Feature: domain Description: URH1 Location: 985148-986078 bp Feature: domain Description: URH1 Location: 9851 48-986078 bp Feature: gene Location: 986137-987174 bp Ori: AGU48013.1 Feature: domain Description: PBP2_TRAP_DctP10 Location: 986236-987148 bp Feature: domain Description: PBP2_TRAP_DctP1 0 Location: 986236-9871 48 bp Feature: gene Location: 987398-989086 bp Ori: AGU48014.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988004-988694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988004-988694 bp Feature: gene Location: 989507-990805 bp Ori: AGU48015.1 Feature: domain Description: DctQ Location: 989666-990791 bp Feature: domain Description: DctQ Location: 989666-990791 bp Feature: gene Location: 990802-991386 bp Ori: AGU48016.1 Feature: domain Description: DctM Location: 990889-991339 bp Feature: domain Description: DctM Location: 990889-991 339 bp Feature: gene Location: 1155777-1156760 bp Ori: AGU48167.1 Feature: domain Description: PRK11139 Location: 1155828-1156704 bp Feature: domain Description: PRK1 1 1 39 Location: 1 1 55828-1 1 56704 bp Feature: gene Location: 1156927-1157247 bp Ori: AGU48168.1 Feature: domain Description: DUF2917 Location: 1157026-1157209 bp Feature: domain Description: DUF291 7 Location: 1 1 57026-1 1 57209 bp Feature: gene Location: 1157674-1158252 bp Ori: AGU48169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158010-1158244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5801 0-1 1 58244 bp Feature: gene Location: 1158324-1158779 bp Ori: AGU48170.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158432-1158591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 58432-1 1 58591 bp Feature: gene Location: 1158629-1159261 bp Ori: AGU48171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158632-1158839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 58632-1 1 58839 bp Feature: domain Description: GIIM Note: maturase Location: 1158896-1159100 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 58896-1 1 591 00 bp Feature: gene Location: 1159352-1159756 bp Ori: AGU48172.1 Feature: domain Description: BLUF Location: 1159373-1159646 bp Feature: domain Description: BLUF Location: 1 1 59373-1 1 59646 bp Feature: gene Location: 1159847-1160617 bp Ori: AGU48173.1 Feature: domain Description: Crp Location: 1159916-1160558 bp Feature: domain Description: Crp Location: 1 1 5991 6-1 1 60558 bp Feature: gene Location: 1742804-1743229 bp Feature: gene Location: 1743499-1744206 bp Ori: AGU48720.1 Feature: domain Description: PRK12828 Location: 1743526-1744201 bp Feature: domain Description: PRK1 2828 Location: 1 743526-1 744201 bp Feature: gene Location: 1744642-1745532 bp Ori: AGU48721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744978-1745344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 744978-1 745344 bp Feature: gene Location: 1745556-1746014 bp Ori: AGU48722.1 Feature: domain Description: GIIM Note: maturase Location: 1745649-1745853 bp Feature: domain Description: GIIM Note: maturase Location: 1 745649-1 745853 bp Feature: gene Location: 1746300-1746446 bp Feature: gene Location: 3399702-3400385 bp Ori: AGU50309.1 Feature: domain Description: Nnt1 Location: 3399855-3400254 bp Feature: domain Description: Nnt1 Location: 3399855-3400254 bp Feature: gene Location: 3400643-3400954 bp Feature: gene Location: 3401139-3402512 bp Ori: AGU50311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401475-3402090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401 475-3402090 bp Feature: domain Description: GIIM Note: maturase Location: 3402147-3402348 bp Feature: domain Description: GIIM Note: maturase Location: 34021 47-3402348 bp Feature: gene Location: 3402958-3403308 bp Feature: gene Location: 3403457-3403804 bp Ori: AGU50313.1 Feature: domain Description: CxxC_CxxC_SSSS Location: 3403460-3403586 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 3403460-3403586 bp Feature: gene Location: 4290502-4291755 bp Ori: AGU51109.1 Feature: domain Description: Nramp Location: 4290586-4291672 bp Feature: domain Description: Nramp Location: 4290586-4291 672 bp Feature: gene Location: 4291856-4292764 bp Ori: AGU51110.1 Feature: domain Description: HTH_1 Location: 4291880-4292057 bp Feature: domain Description: HTH_1 Location: 4291 880-4292057 bp Feature: domain Description: PBP2_DntR_NahR_LinR_like Location: 4292150-4292747 bp Feature: domain Description: PBP2_DntR_NahR_LinR_like Location: 42921 50-4292747 bp Feature: gene Location: 4292942-4294588 bp Ori: AGU51111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4293506-4294196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4293506-42941 96 bp Feature: gene Location: 4294854-4296053 bp Ori: AGU51112.1 Feature: domain Description: YliI Location: 4294878-4296048 bp Feature: domain Description: YliI Location: 4294878-4296048 bp Feature: gene Location: 4296050-4296703 bp Ori: AGU51113.1 Feature: domain Description: CytC553 Location: 4296071-4296461 bp Feature: domain Description: CytC553 Location: 4296071 -4296461 bp Feature: domain Description: CytC553 Location: 4296470-4296686 bp Feature: domain Description: CytC553 Location: 4296470-4296686 bp Feature: gene Location: 4694678-4695568 bp Ori: AGU51507.1 Feature: domain Description: LysR Location: 4694708-4695536 bp Feature: domain Description: LysR Location: 4694708-4695536 bp Feature: gene Location: 4695943-4696083 bp Feature: gene Location: 4696388-4698148 bp Ori: AGU51509.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4696532-4697138 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4696532-46971 38 bp Feature: domain Description: Trypsin_2 Location: 4697615-4698065 bp Feature: domain Description: Trypsin_2 Location: 469761 5-4698065 bp Feature: gene Location: 4698437-4699024 bp Feature: gene Location: 4699038-4700063 bp Sorry, your browser does not support inline 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Associated domains:myRT URH1 (COG1957), PBP2_TRAP_DctP10 (cd13678), RVT-GII, DctQ (pfam04290), DctM (pfam06808), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), DUF2917 (pfam11142), GIIM (pfam08388), BLUF (smart01034), Crp (pfam00325)
PRK12828 (short chain dehydrogenase; Provisional), Nnt1 (COG3897), CxxC_CxxC_SSSS (TIGR02605), Nramp (pfam01566), HTH_1 (pfam00126), PBP2_DntR_NahR_LinR_like (cd08459), YliI (COG2133), CytC553 (COG2863), LysR (COG0583), RVT-Retrons
Trypsin_2 (pfam13365)