myRT

myRT report for GCA_000463345.3_ASM46334v3

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Seq: CP025084.1 Serratia sp. ATCC 39006 chromosome, complete genome (4971757 bp)
Overview 1 RT 1: 1252937-1259827 bp 2 RT 2: 1500268-1508056 bp 3 RT 3: 1719222-1723184 bp 4 RT 4: 4623355-4630577 bp Neighborhood of RT #1 [1252937, 1259829] mogA MFS_SV2_like RVT-GII GIIM PRK10659 dnaK Neighborhood of RT #2 [1500268, 1508067] PRK10225 PRK10727 RVT-GII GIIM PRK08043 PRK11195 Neighborhood of RT #3 [1719222, 1723184] COG3547 HTH_Tnp_1 RVT-Retrons Neighborhood of RT #4 [4623355, 4630726] PRK09692 RVT-Retrons HNH_2 Feature: gene Location: 1252937-1253524 bp Ori: AUH03692.1 Feature: domain Description: mogA Location: 1252940-1253513 bp Feature: domain Description: mogA Location: 1 252940-1 25351 3 bp Feature: gene Location: 1253652-1254980 bp Ori: AUH03693.1 Feature: domain Description: MFS_SV2_like Location: 1253709-1254897 bp Feature: domain Description: MFS_SV2_like Location: 1 253709-1 254897 bp Feature: gene Location: 1255485-1256873 bp Ori: AUH03694.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255815-1256433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25581 5-1 256433 bp Feature: domain Description: GIIM Note: maturase Location: 1256484-1256703 bp Feature: domain Description: GIIM Note: maturase Location: 1 256484-1 256703 bp Feature: gene Location: 1256963-1257544 bp Ori: AUH03695.1 Feature: domain Description: PRK10659 Location: 1256966-1257521 bp Feature: domain Description: PRK1 0659 Location: 1 256966-1 257521 bp Feature: gene Location: 1257907-1259829 bp Ori: AUH03696.1 Feature: domain Description: dnaK Location: 1257910-1259827 bp Feature: domain Description: dnaK Location: 1 25791 0-1 259827 bp Feature: gene Location: 1500268-1501035 bp Ori: AUH03887.1 Feature: domain Description: PRK10225 Location: 1500295-1501015 bp Feature: domain Description: PRK1 0225 Location: 1 500295-1 501 01 5 bp Feature: gene Location: 1501111-1502136 bp Ori: AUH03888.1 Feature: domain Description: PRK10727 Location: 1501114-1502116 bp Feature: domain Description: PRK1 0727 Location: 1 501 1 1 4-1 5021 1 6 bp Feature: gene Location: 1502976-1504364 bp Ori: AUH03889.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1503306-1503924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 503306-1 503924 bp Feature: domain Description: GIIM Note: maturase Location: 1503975-1504179 bp Feature: domain Description: GIIM Note: maturase Location: 1 503975-1 5041 79 bp Feature: gene Location: 1504700-1506862 bp Ori: AUH03890.1 Feature: domain Description: PRK08043 Location: 1504703-1506857 bp Feature: domain Description: PRK08043 Location: 1 504703-1 506857 bp Feature: gene Location: 1506859-1508067 bp Ori: AUH03891.1 Feature: domain Description: PRK11195 Location: 1506898-1508056 bp Feature: domain Description: PRK1 1 1 95 Location: 1 506898-1 508056 bp Feature: gene Location: 1719222-1720046 bp Feature: domain Description: COG3547 Location: 1719228-1720008 bp Feature: domain Description: COG3547 Location: 1 71 9228-1 720008 bp Feature: gene Location: 1720265-1720381 bp Feature: domain Description: HTH_Tnp_1 Location: 1720271-1720382 bp Feature: domain Description: HTH_Tnp_1 Location: 1 720271 -1 720382 bp Feature: gene Location: 1720550-1721503 bp Ori: AUH04083.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1720652-1721240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 720652-1 721 240 bp Feature: gene Location: 1721516-1722487 bp Feature: gene Location: 1722808-1723184 bp Feature: gene Location: 4623355-4624584 bp Ori: AUH06948.1 Feature: domain Description: PRK09692 Location: 4623358-4624564 bp Feature: domain Description: PRK09692 Location: 4623358-4624564 bp Feature: gene Location: 4624664-4625764 bp Feature: gene Location: 4625922-4627643 bp Ori: AUH06389.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4626060-4626684 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4626060-4626684 bp Feature: gene Location: 4628312-4629624 bp Feature: gene Location: 4629791-4630726 bp Ori: AUH06390.1 Feature: domain Description: HNH_2 Location: 4630439-4630577 bp Feature: domain Description: HNH_2 Location: 4630439-4630577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mogA (PRK09417), MFS_SV2_like (cd17316), RVT-GII, GIIM (pfam08388), PRK10659 (acetate uptake transporter), dnaK (PRK00290), PRK10225 (Uxu operon transcriptional regulator), PRK10727 (HTH-type transcriptional regulator GalR), PRK08043 (bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase), PRK11195 (lysophospholipid transporter LplT; Provisional)
COG3547 (Transposase ), HTH_Tnp_1 (pfam01527), RVT-Retrons, PRK09692 (Integrase; provisional), HNH_2 (pfam13391)