myRT

myRT report for GCA_000463505.1_ASM46350v1

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Seq: CP003861.1 Streptococcus anginosus C238, complete genome (2233640 bp)
Overview 1 RT 1: 605500-615288 bp 2 RT 2: 1294654-1299772 bp 3 RT 3: 1414950-1421250 bp 4 RT 4: 1984075-1990351 bp Neighborhood of RT #1 [605500, 615308] P-type_ATPase_Ca_prok P-type_ATPase_SERCA DUF2785 RVT-GII Intron_maturas2 HNHc prfB FtsE Neighborhood of RT #2 [1294654, 1299813] InsE Tra5 RVT-GII KOG4768 HNHc Maff2 SSB_OBF Neighborhood of RT #3 [1414950, 1421250] lp_hng_hel_AbrB PRK07726 RVT-GII GIIM COG2433 DUF4366 Neighborhood of RT #4 [1984075, 1990458] RVT-GII KOG4768 HNHc SSB_OBF VirD4 Feature: gene Location: 605500-608193 bp Ori: AGU83076.1 Feature: domain Description: P-type_ATPase_Ca_prok Location: 605584-607735 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 605584-607735 bp Feature: domain Description: P-type_ATPase_SERCA Location: 607879-608164 bp Feature: domain Description: P-type_ATPase_SERCA Location: 607879-6081 64 bp Feature: gene Location: 608252-609043 bp Ori: AGU83077.1 Feature: domain Description: DUF2785 Location: 608504-608975 bp Feature: domain Description: DUF2785 Location: 608504-608975 bp Feature: gene Location: 610272-612050 bp Ori: AGU83078.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610533-611325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 0533-61 1 325 bp Feature: domain Description: Intron_maturas2 Location: 611430-611661 bp Feature: domain Description: Intron_maturas2 Location: 61 1 430-61 1 661 bp Feature: domain Description: HNHc Note: nucleases Location: 611841-612012 bp Feature: domain Description: HNHc Note: nucleases Location: 61 1 841 -61 201 2 bp Feature: gene Location: 613534-614511 bp Ori: AGU83079.1 Gene: prfB Feature: domain Description: prfB Location: 613537-614506 bp Feature: domain Description: prfB Location: 61 3537-61 4506 bp Feature: gene Location: 614616-615308 bp Ori: AGU83080.1 Gene: ftsE Feature: domain Description: FtsE Location: 614625-615288 bp Feature: domain Description: FtsE Location: 61 4625-61 5288 bp Feature: gene Location: 1294654-1295190 bp Ori: AGU83698.1 Feature: domain Description: InsE Location: 1294660-1294978 bp Feature: domain Description: InsE Location: 1 294660-1 294978 bp Feature: gene Location: 1295166-1296005 bp Ori: AGU83699.1 Feature: domain Description: Tra5 Location: 1295265-1295994 bp Feature: domain Description: Tra5 Location: 1 295265-1 295994 bp Feature: gene Location: 1296786-1298654 bp Ori: AGU83700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1297113-1297851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2971 1 3-1 297851 bp Feature: domain Description: KOG4768 Location: 1297980-1298130 bp Feature: domain Description: KOG4768 Location: 1 297980-1 2981 30 bp Feature: domain Description: HNHc Note: nucleases Location: 1298382-1298544 bp Feature: domain Description: HNHc Note: nucleases Location: 1 298382-1 298544 bp Feature: gene Location: 1299367-1299498 bp Ori: AGU83701.1 Feature: domain Description: Maff2 Location: 1299370-1299496 bp Feature: domain Description: Maff2 Location: 1 299370-1 299496 bp Feature: gene Location: 1299502-1299813 bp Ori: AGU83702.1 Feature: domain Description: SSB_OBF Location: 1299529-1299772 bp Feature: domain Description: SSB_OBF Location: 1 299529-1 299772 bp Feature: gene Location: 1414950-1415129 bp Ori: AGU83784.1 Feature: domain Description: lp_hng_hel_AbrB Location: 1414980-1415082 bp Feature: domain Description: lp_hng_hel_AbrB Location: 1 41 4980-1 41 5082 bp Feature: gene Location: 1415213-1416919 bp Ori: AGU83785.1 Feature: domain Description: PRK07726 Location: 1415216-1416911 bp Feature: domain Description: PRK07726 Location: 1 41 521 6-1 41 691 1 bp Feature: gene Location: 1417009-1418250 bp Ori: AGU83786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417201-1417816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 7201 -1 41 781 6 bp Feature: domain Description: GIIM Note: maturase Location: 1417870-1418101 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 7870-1 41 81 01 bp Feature: gene Location: 1418847-1421036 bp Ori: AGU83787.1 Feature: domain Description: COG2433 Location: 1419864-1420197 bp Feature: domain Description: COG2433 Location: 1 41 9864-1 4201 97 bp Feature: domain Description: DUF4366 Location: 1420599-1420917 bp Feature: domain Description: DUF4366 Location: 1 420599-1 42091 7 bp Feature: gene Location: 1421014-1421250 bp Feature: gene Location: 1984075-1984338 bp Feature: gene Location: 1984356-1985219 bp Feature: gene Location: 1985482-1987350 bp Ori: AGU84265.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1985809-1986547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 985809-1 986547 bp Feature: domain Description: KOG4768 Location: 1986676-1986826 bp Feature: domain Description: KOG4768 Location: 1 986676-1 986826 bp Feature: domain Description: HNHc Note: nucleases Location: 1987078-1987240 bp Feature: domain Description: HNHc Note: nucleases Location: 1 987078-1 987240 bp Feature: gene Location: 1988198-1988509 bp Ori: AGU84266.1 Feature: domain Description: SSB_OBF Location: 1988225-1988468 bp Feature: domain Description: SSB_OBF Location: 1 988225-1 988468 bp Feature: gene Location: 1988674-1990458 bp Ori: AGU84267.1 Feature: domain Description: VirD4 Location: 1988914-1990351 bp Feature: domain Description: VirD4 Location: 1 98891 4-1 990351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), DUF2785 (pfam10978), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), prfB (TIGR00020), FtsE (TIGR02673), InsE (COG2963), Tra5 (COG2801)
KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Maff2 (pfam12750), SSB_OBF (cd04496), lp_hng_hel_AbrB (TIGR01439), PRK07726 (DNA topoisomerase 3), GIIM (pfam08388), COG2433 (Possible nuclease of RNase H fold, RuvC/YqgF family ), DUF4366 (pfam14283), VirD4 (COG3505)