myRT

myRT report for GCA_000464435.1_ASM46443v1

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Seq: CP006606.1 Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence (2195939 bp) Associated domains: RVT-GII, GIIM (pfam08388), YitT (COG1284), COG3791 (Uncharacterized conserved protein ), DUF924 (pfam06041), PepF (COG1164), RVT_N (pfam13655), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281)
PRK11020 (YibL family ribosome-associated protein), YdiL (COG1266), PepSY_TM_like_2 (pfam16357), DUF2271 (pfam10029), PRK15064 (ABC transporter ATP-binding protein; Provisional), COG4628 (Uncharacterized conserved protein, DUF2132 family ), DUF2000 (pfam09391), DDE_Tnp_1_5 (pfam13737), PRK15130 (spermidine N1-acetyltransferase; Provisional), MdaB (COG2249)
HxlR (pfam01638), group_II_RT_mat (TIGR04416), PBP2_BvgS_HisK_like (cd01007), PRK10841 (two-component system sensor histidine kinase RcsC), TMAO_torS (TIGR02956), MauG (COG1858), OsmC (pfam02566), DUF2804 (pfam10974), YigB (COG1011), PRK09272 (hypothetical protein; Provisional)
PRK10837 (putative DNA-binding transcriptional regulator; Provisional), DUF1097 (pfam06496), DUF2813 (pfam11398), TOPRIM_OLD (cd01026), UshA (COG0737), DUF2541 (pfam10807), OmpA_C-like (cl30079), FimA (pfam16970)

Seq: CP006605.1 Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence (3746887 bp) Associated domains: PRK11102 (Bcr/CflA family multidrug efflux MFS transporter), DUF2913 (pfam11140), RVT-GII, GIIM (pfam08388), SDR_a2 (cd05245), DUF2867 (pfam11066), MATE_like_8 (cd13134), MopB_Tetrathionate-Ra (cd02758), PRK15488 (thiosulfate reductase PhsA; Provisional), RVT_N (pfam13655)
HTH_ARSR (smart00418), DDE_Tnp_1 (pfam01609), metA (TIGR01001), Acetyltransf_1 (pfam00583), NagB (COG0363), gnd (TIGR00873), COG5361 (Uncharacterized conserved protein ), Nudix_Hydrolase_6 (cd04663), Nudix_Hydrolase_11 (cd04669), YecT (COG3755)
SDR_a4 (cd05266), YdcF-like (cl00630), PRK04296 (thymidine kinase; Provisional), cysS (TIGR00435), PRK05457 (protease HtpX), PRK12374 (ATP-dependent dethiobiotin synthetase BioD), BioC (TIGR02072), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-CRISPR
Big_1 (pfam02369), PRK11177 (phosphoenolpyruvate-protein phosphotransferase PtsI), PRK09439 (PTS system glucose-specific transporter subunit; Provisional), HTH_23 (pfam13384), group_II_RT_mat (TIGR04416), flgL (PRK12718), flgK (PRK12715), flagell_FlgJ (TIGR02541), flgI (PRK12789), PHA02517 (putative transposase OrfB; Reviewed)
HTH_29 (pfam13551), MS_channel (pfam00924), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), AlsT (COG1115), PRK10659 (acetate uptake transporter), chitinase_GH19 (cd00325), COG3979 (Chitodextrinase ), ChtBD3 (smart00495), ElaA (COG2153), RhaT (TIGR00776)
OapA (pfam04225), PRK11570 (peptidyl-prolyl cis-trans isomerase; Provisional), DUF2282 (pfam10048), uvrD (TIGR01075), Ggt (COG0405), RhtB (COG1280), DUF3630 (pfam12305), PRK11212 (7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter), PRK11031 (guanosine-5'-triphosphate,3'-diphosphate diphosphatase), PRK04837 (ATP-dependent RNA helicase RhlB; Provisional)
Chor_lyase (pfam04345), ubiA (PRK13595), plsB (TIGR03703), groES (PRK14533), groEL (PRK12852), SapB (smart00741), YjgA (COG3028), PRK11040 (peptidase PmbA; Provisional), MgtE (pfam01769), PRK10897 (PTS phosphocarrier protein NPr)
MurA (COG0766), PRK15018 (1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional), PRK11401 (enamine/imine deaminase), PRK00893 (aspartate carbamoyltransferase regulatory subunit; Reviewed), Ptr (COG1025), SixA (COG2062), PRK11111 (YchE family NAAT transporter), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), PRK08862 (SDR family oxidoreductase), Ribosomal_S4Pg (pfam11993)
DUF2753 (pfam10952), glyox_I (TIGR00068), Tar (COG0840)

Seq: CP006607.1 Vibrio campbellii ATCC BAA-1116 plasmid, complete sequence (89003 bp) Associated domains: YdjM (pfam04307), FimT (COG4970), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YecT (COG3755), DDE_Tnp_IS66_C (pfam13817), HTH_29 (pfam13551), HTH_33 (pfam13592)
DDE_3 (pfam13358)