myRT

myRT report for GCA_000471925.1_ASM47192v1

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Seq: CP006667.1 Ralstonia pickettii DTP0602 chromosome 1, complete sequence (4499145 bp)
Overview 1 RT 1: 1970440-1977045 bp 2 RT 2: 2700894-2707299 bp Neighborhood of RT #1 [1970440, 1977074] PBP2_Bug27 gram_neg_porins RVT-GII YcbJ PBP2_LTTR_like_1 Neighborhood of RT #2 [2700894, 2707319] PRK00174 RVT-GII gram_neg_porins CitB Feature: gene Location: 1970440-1971417 bp Ori: AGW90229.1 Feature: domain Description: PBP2_Bug27 Location: 1970524-1971394 bp Feature: domain Description: PBP2_Bug27 Location: 1 970524-1 971 394 bp Feature: gene Location: 1971594-1972715 bp Ori: AGW90230.1 Feature: domain Description: gram_neg_porins Location: 1971732-1972713 bp Feature: domain Description: gram_neg_porins Location: 1 971 732-1 97271 3 bp Feature: gene Location: 1973072-1974550 bp Ori: AGW90231.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973483-1974170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 973483-1 9741 70 bp Feature: gene Location: 1974787-1975848 bp Ori: AGW90232.1 Feature: domain Description: YcbJ Location: 1974826-1975816 bp Feature: domain Description: YcbJ Location: 1 974826-1 97581 6 bp Feature: gene Location: 1976598-1977074 bp Ori: AGW90233.1 Feature: domain Description: PBP2_LTTR_like_1 Location: 1976670-1977045 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 1 976670-1 977045 bp Feature: gene Location: 2700894-2702876 bp Ori: AGW90867.1 Feature: domain Description: PRK00174 Location: 2700936-2702871 bp Feature: domain Description: PRK001 74 Location: 2700936-2702871 bp Feature: gene Location: 2703025-2703162 bp Feature: gene Location: 2703391-2704869 bp Ori: AGW90869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703802-2704489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703802-2704489 bp Feature: gene Location: 2705226-2706341 bp Ori: AGW90870.1 Feature: domain Description: gram_neg_porins Location: 2705292-2706339 bp Feature: domain Description: gram_neg_porins Location: 2705292-2706339 bp Feature: gene Location: 2706663-2707319 bp Ori: AGW90871.1 Feature: domain Description: CitB Location: 2706684-2707299 bp Feature: domain Description: CitB Location: 2706684-2707299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_Bug27 (cd13578), gram_neg_porins (cd00342), RVT-GII, YcbJ (COG3173), PBP2_LTTR_like_1 (cd08421), PRK00174 (acetyl-CoA synthetase; Provisional), CitB (TIGR02484)

Seq: CP006668.1 Ralstonia pickettii DTP0602 chromosome 2, complete sequence (2889590 bp)
Overview 1 RT 1: 1056903-1065555 bp Neighborhood of RT #1 [1056903, 1065626] PBP2_Bug_TTT gram_neg_porins RVT-GII RVT-GII CMD Arabinose_bd HTH_ARAC Feature: gene Location: 1056903-1057904 bp Ori: AGW93472.1 Feature: domain Description: PBP2_Bug_TTT Location: 1057020-1057890 bp Feature: domain Description: PBP2 _Bug_TTT Location: 105702 0-1057890 bp Feature: gene Location: 1058112-1059275 bp Ori: AGW93473.1 Feature: domain Description: gram_neg_porins Location: 1058184-1059273 bp Feature: domain Description: gram_neg_porins Location: 1058184-10592 73 bp Feature: gene Location: 1059632-1061110 bp Ori: AGW93474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060043-1060730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060043-1060730 bp Feature: gene Location: 1061540-1063018 bp Ori: AGW93475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061951-1062638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061951-1062 638 bp Feature: gene Location: 1063979-1064509 bp Ori: AGW93476.1 Feature: domain Description: CMD Location: 1064099-1064345 bp Feature: domain Description: CMD Location: 1064099-1064345 bp Feature: gene Location: 1064577-1065626 bp Ori: AGW93477.1 Feature: domain Description: Arabinose_bd Location: 1064652-1065198 bp Feature: domain Description: Arabinose_bd Location: 1064652 -1065198 bp Feature: domain Description: HTH_ARAC Location: 1065330-1065555 bp Feature: domain Description: HTH_ARAC Location: 1065330-1065555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_Bug_TTT (cd07012), gram_neg_porins (cd00342), RVT-GII, CMD (pfam02627), Arabinose_bd (pfam12625), HTH_ARAC (smart00342)

Seq: CP006669.1 Ralstonia pickettii DTP0602 chromosome 3, complete sequence (737115 bp)
Overview 1 RT 1: 462284-466969 bp 2 RT 2: 555881-562094 bp Neighborhood of RT #1 [462284, 467040] DDE_3 Tra5 RVT-GII GIIM HTH_32 HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #2 [555881, 562219] RVT-GII RVT-GII HTH_XRE DZR TOMM_kin_cyc Feature: gene Location: 462284-462949 bp Ori: AGW95581.1 Feature: domain Description: DDE_3 Location: 462494-462929 bp Feature: domain Description: DDE_3 Location: 462494-462929 bp Feature: gene Location: 463201-463773 bp Ori: AGW95582.1 Feature: domain Description: Tra5 Location: 463210-463621 bp Feature: domain Description: Tra5 Location: 463 210-463 621 bp Feature: gene Location: 463902-465434 bp Ori: AGW95583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464175-464913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464175-464913 bp Feature: domain Description: GIIM Note: maturase Location: 465024-465195 bp Feature: domain Description: GIIM Note: maturase Location: 465024-465195 bp Feature: gene Location: 466061-466567 bp Ori: AGW95584.1 Feature: domain Description: HTH_32 Location: 466190-466415 bp Feature: domain Description: HTH_3 2 Location: 466190-466415 bp Feature: gene Location: 466543-467040 bp Ori: AGW95585.1 Feature: domain Description: HTH_Tnp_1 Location: 466549-466687 bp Feature: domain Description: HTH_Tnp_1 Location: 466549-466687 bp Feature: domain Description: HTH_Tnp_1 Location: 466720-466969 bp Feature: domain Description: HTH_Tnp_1 Location: 466720-466969 bp Feature: gene Location: 555881-556084 bp Feature: gene Location: 556084-556218 bp Feature: gene Location: 556877-557494 bp Ori: AGW95670.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556898-557114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556898-557114 bp Feature: gene Location: 557448-557903 bp Ori: AGW95671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557451-557634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557451-55763 4 bp Feature: gene Location: 558140-558463 bp Ori: AGW95672.1 Feature: domain Description: HTH_XRE Location: 558209-558353 bp Feature: domain Description: HTH_XRE Location: 558209-5583 53 bp Feature: gene Location: 558809-562219 bp Ori: AGW95673.1 Feature: domain Description: DZR Location: 558818-558947 bp Feature: domain Description: DZR Location: 558818-558947 bp Feature: domain Description: TOMM_kin_cyc Location: 559070-562094 bp Feature: domain Description: TOMM_kin_cyc Location: 559070-562094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527), HTH_XRE (smart00530), DZR (pfam12773), TOMM_kin_cyc (TIGR03903)