myRT

myRT report for GCA_000473995.1_ASM47399v1

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Seq: CP006721.1 Clostridium saccharobutylicum DSM 13864, complete genome (5107814 bp)
Overview 1 RT 1: 1601105-1605556 bp 2 RT 2: 2236832-2245512 bp 3 RT 3: 2359870-2367279 bp 4 RT 4: 5006751-5011645 bp Neighborhood of RT #1 [1601105, 1605556] RVT-GII RVT-GII Neighborhood of RT #2 [2236832, 2245550] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #3 [2359870, 2367779] Enpp RVT-Retrons UvrD UvrD Neighborhood of RT #4 [5006751, 5011647] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 1601105-1601287 bp Feature: gene Location: 1601976-1602092 bp Feature: gene Location: 1603475-1604113 bp Ori: AGX42429.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603811-1603994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60381 1 -1 603994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603997-1604102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 603997-1 6041 02 bp Feature: gene Location: 1604541-1604954 bp Feature: gene Location: 1605422-1605556 bp Feature: gene Location: 2236832-2239879 bp Feature: gene Location: 2239881-2241689 bp Feature: gene Location: 2241686-2243191 bp Ori: AGX42969.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2242322-2242964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2242322-2242964 bp Feature: gene Location: 2243779-2244804 bp Ori: AGX42970.1 Feature: domain Description: DUF1835 Location: 2243794-2244163 bp Feature: domain Description: DUF1 835 Location: 2243794-22441 63 bp Feature: domain Description: DUF3658 Location: 2244253-2244565 bp Feature: domain Description: DUF3658 Location: 2244253-2244565 bp Feature: gene Location: 2245023-2245550 bp Ori: AGX42971.1 Gene: sigW Feature: domain Description: Sig70_famx3 Location: 2245029-2245512 bp Feature: domain Description: Sig70_famx3 Location: 2245029-224551 2 bp Feature: gene Location: 2359870-2360406 bp Feature: gene Location: 2360977-2362281 bp Ori: AGX43071.1 Feature: domain Description: Enpp Location: 2360995-2362231 bp Feature: domain Description: Enpp Location: 2360995-2362231 bp Feature: gene Location: 2362583-2363707 bp Ori: AGX43072.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2362799-2363357 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2362799-2363357 bp Feature: gene Location: 2363919-2364926 bp Feature: gene Location: 2365212-2367779 bp Ori: AGX43074.1 Feature: domain Description: UvrD Location: 2365734-2366862 bp Feature: domain Description: UvrD Location: 2365734-2366862 bp Feature: domain Description: UvrD Location: 2367039-2367279 bp Feature: domain Description: UvrD Location: 2367039-2367279 bp Feature: gene Location: 5006751-5008019 bp Ori: AGX45393.1 Feature: domain Description: DDE_Tnp_1 Location: 5007102-5007717 bp Feature: domain Description: DDE_Tnp_1 Location: 50071 02-500771 7 bp Feature: gene Location: 5008078-5008935 bp Ori: AGX45394.1 Feature: domain Description: PHA02517 Location: 5008366-5008915 bp Feature: domain Description: PHA0251 7 Location: 5008366-500891 5 bp Feature: gene Location: 5009461-5010996 bp Ori: AGX45395.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5009533-5009776 bp Feature: domain Description: RVT_N Location: 5009533-5009776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009821-5010481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5009821 -501 0481 bp Feature: domain Description: GIIM Note: maturase Location: 5010532-5010769 bp Feature: domain Description: GIIM Note: maturase Location: 501 0532-501 0769 bp Feature: domain Description: rve_2 Location: 5010913-5010988 bp Feature: domain Description: rve_2 Location: 501 091 3-501 0988 bp Feature: gene Location: 5011070-5011336 bp Ori: AGX45396.1 Feature: domain Description: plantaricin Location: 5011091-5011334 bp Feature: domain Description: plantaricin Location: 501 1 091 -501 1 334 bp Feature: gene Location: 5011381-5011647 bp Ori: AGX45397.1 Feature: domain Description: plantaricin Location: 5011402-5011645 bp Feature: domain Description: plantaricin Location: 501 1 402-501 1 645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210), DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655)
GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)