myRT

myRT report for GCA_000487015.2_ASM48701v2

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Seq: CP019201.1 Salmonella enterica subsp. enterica serovar Muenster str. 420 strain CFSAN001301 chromosome, complete genome (4756014 bp)
Overview 1 RT 1: 88819-96084 bp Neighborhood of RT #1 [88819, 96089] CsgD HTH_Tnp_1 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 88819-89436 bp Ori: AUM47815.1 Feature: domain Description: CsgD Location: 89248-89413 bp Feature: domain Description: CsgD Location: 89248-8941 3 bp Feature: gene Location: 90713-90910 bp Ori: AUM47816.1 Feature: domain Description: HTH_Tnp_1 Location: 90728-90845 bp Feature: domain Description: HTH_Tnp_1 Location: 90728-90845 bp Feature: gene Location: 91201-92808 bp Ori: AUM47817.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91492-92089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91 492-92089 bp Feature: domain Description: TIR_2 Location: 92413-92773 bp Feature: domain Description: TIR_2 Location: 9241 3-92773 bp Feature: gene Location: 93421-95754 bp Ori: AUM47818.1 Feature: domain Description: Prim_Zn_Ribbon Location: 93511-93619 bp Feature: domain Description: Prim_Zn_Ribbon Location: 9351 1 -9361 9 bp Feature: domain Description: COG3378 Location: 94237-95746 bp Feature: domain Description: COG3378 Location: 94237-95746 bp Feature: gene Location: 95769-96089 bp Ori: AUM47819.1 Feature: domain Description: DUF5375 Location: 95772-96084 bp Feature: domain Description: DUF5375 Location: 95772-96084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsgD (COG2771), HTH_Tnp_1 (pfam01527), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)