myRT

myRT report for GCA_000493295.2_ASM49329v2

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Seq: CP019190.1 Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence (186451 bp)
Overview 1 RT 1: 67735-73584 bp 2 RT 2: 98376-115067 bp 3 RT 3: 136234-143401 bp Neighborhood of RT #1 [67735, 73697] DDE_Tnp_Tn3 DDE_Tnp_Tn3 COG3547 RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 phd_fam Neighborhood of RT #2 [98376, 115261] IAT_beta Big_1 Invasin_D3 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 RVT-UG4 rve_2 RelE COG3547 RVT-UG4 IAT_beta Big_1 Invasin_D3 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 CaiF_GrlA Neighborhood of RT #3 [136234, 143401] HTH_23 InsE RVT-UG4 IAT_beta Big_1 Invasin_D3 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Big_1 Feature: gene Location: 67735-69523 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 68257-68362 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 68257-68362 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 68923-69040 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 68923-69040 bp Feature: gene Location: 69791-70614 bp Feature: domain Description: COG3547 Location: 69803-70235 bp Feature: domain Description: COG3547 Location: 69803-70235 bp Feature: gene Location: 70756-71760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70759-71395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70759-71 395 bp Feature: domain Description: GIIM Note: maturase Location: 71518-71686 bp Feature: domain Description: GIIM Note: maturase Location: 71 51 8-71 686 bp Feature: gene Location: 71910-73106 bp Ori: AUM43188.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 71952-72414 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 71 952-7241 4 bp Feature: domain Description: Transposase_20 Location: 72741-72984 bp Feature: domain Description: Transposase_20 Location: 72741 -72984 bp Feature: gene Location: 73428-73697 bp Ori: AUM43189.1 Feature: domain Description: phd_fam Location: 73440-73584 bp Feature: domain Description: phd_fam Location: 73440-73584 bp Feature: gene Location: 98376-98600 bp Feature: gene Location: 98728-104349 bp Ori: AUM43214.1 Feature: domain Description: IAT_beta Location: 99115-99976 bp Feature: domain Description: IAT_beta Location: 991 1 5-99976 bp Feature: domain Description: Big_1 Location: 100351-100420 bp Feature: domain Description: Big_1 Location: 1 00351 -1 00420 bp Feature: domain Description: Invasin_D3 Location: 100687-101008 bp Feature: domain Description: Invasin_D3 Location: 1 00687-1 01 008 bp Feature: domain Description: Big_1 Location: 101062-101257 bp Feature: domain Description: Big_1 Location: 1 01 062-1 01 257 bp Feature: domain Description: Big_1 Location: 101401-101572 bp Feature: domain Description: Big_1 Location: 1 01 401 -1 01 572 bp Feature: domain Description: Big_1 Location: 101725-101896 bp Feature: domain Description: Big_1 Location: 1 01 725-1 01 896 bp Feature: domain Description: Big_1 Location: 102094-102256 bp Feature: domain Description: Big_1 Location: 1 02094-1 02256 bp Feature: domain Description: Big_1 Location: 102409-102592 bp Feature: domain Description: Big_1 Location: 1 02409-1 02592 bp Feature: domain Description: Big_1 Location: 102763-102964 bp Feature: domain Description: Big_1 Location: 1 02763-1 02964 bp Feature: domain Description: Big_1 Location: 103087-103270 bp Feature: domain Description: Big_1 Location: 1 03087-1 03270 bp Feature: gene Location: 104251-104943 bp Ori: AUM43215.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 104254-104674 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 04254-1 04674 bp Feature: gene Location: 105815-105990 bp Feature: domain Description: rve_2 Location: 105833-105938 bp Feature: domain Description: rve_2 Location: 1 05833-1 05938 bp Feature: gene Location: 106118-106408 bp Ori: AUM43216.1 Feature: domain Description: RelE Location: 106121-106382 bp Feature: domain Description: RelE Location: 1 061 21 -1 06382 bp Feature: gene Location: 106887-107186 bp Feature: gene Location: 107406-108425 bp Ori: AUM43219.1 Feature: domain Description: COG3547 Location: 107424-108369 bp Feature: domain Description: COG3547 Location: 1 07424-1 08369 bp Feature: gene Location: 108573-109178 bp Ori: AUM43220.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 108576-108870 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 08576-1 08870 bp Feature: gene Location: 109041-114674 bp Ori: AUM43221.1 Feature: domain Description: IAT_beta Location: 109428-110289 bp Feature: domain Description: IAT_beta Location: 1 09428-1 1 0289 bp Feature: domain Description: Big_1 Location: 110664-110733 bp Feature: domain Description: Big_1 Location: 1 1 0664-1 1 0733 bp Feature: domain Description: Invasin_D3 Location: 111000-111321 bp Feature: domain Description: Invasin_D3 Location: 1 1 1 000-1 1 1 321 bp Feature: domain Description: Big_1 Location: 111375-111570 bp Feature: domain Description: Big_1 Location: 1 1 1 375-1 1 1 570 bp Feature: domain Description: Big_1 Location: 111714-111885 bp Feature: domain Description: Big_1 Location: 1 1 1 71 4-1 1 1 885 bp Feature: domain Description: Big_1 Location: 112038-112209 bp Feature: domain Description: Big_1 Location: 1 1 2038-1 1 2209 bp Feature: domain Description: Big_1 Location: 112407-112569 bp Feature: domain Description: Big_1 Location: 1 1 2407-1 1 2569 bp Feature: domain Description: Big_1 Location: 112722-112905 bp Feature: domain Description: Big_1 Location: 1 1 2722-1 1 2905 bp Feature: domain Description: Big_1 Location: 113076-113277 bp Feature: domain Description: Big_1 Location: 1 1 3076-1 1 3277 bp Feature: gene Location: 114767-115261 bp Ori: AUM43222.1 Feature: domain Description: CaiF_GrlA Location: 114815-115067 bp Feature: domain Description: CaiF_GrlA Location: 1 1 481 5-1 1 5067 bp Feature: gene Location: 136234-136911 bp Feature: domain Description: HTH_23 Location: 136306-136405 bp Feature: domain Description: HTH_23 Location: 1 36306-1 36405 bp Feature: domain Description: InsE Location: 136510-136891 bp Feature: domain Description: InsE Location: 1 3651 0-1 36891 bp Feature: gene Location: 136862-136993 bp Feature: gene Location: 136917-137525 bp Ori: AUM43244.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 136995-137256 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 36995-1 37256 bp Feature: gene Location: 137427-143048 bp Ori: AUM43245.1 Feature: domain Description: IAT_beta Location: 137814-138675 bp Feature: domain Description: IAT_beta Location: 1 3781 4-1 38675 bp Feature: domain Description: Big_1 Location: 139050-139119 bp Feature: domain Description: Big_1 Location: 1 39050-1 391 1 9 bp Feature: domain Description: Invasin_D3 Location: 139386-139707 bp Feature: domain Description: Invasin_D3 Location: 1 39386-1 39707 bp Feature: domain Description: Big_1 Location: 139761-139956 bp Feature: domain Description: Big_1 Location: 1 39761 -1 39956 bp Feature: domain Description: Big_1 Location: 140100-140271 bp Feature: domain Description: Big_1 Location: 1 401 00-1 40271 bp Feature: domain Description: Big_1 Location: 140424-140595 bp Feature: domain Description: Big_1 Location: 1 40424-1 40595 bp Feature: domain Description: Big_1 Location: 140793-140955 bp Feature: domain Description: Big_1 Location: 1 40793-1 40955 bp Feature: domain Description: Big_1 Location: 141108-141291 bp Feature: domain Description: Big_1 Location: 1 41 1 08-1 41 291 bp Feature: domain Description: Big_1 Location: 141462-141663 bp Feature: domain Description: Big_1 Location: 1 41 462-1 41 663 bp Feature: domain Description: Big_1 Location: 141786-141969 bp Feature: domain Description: Big_1 Location: 1 41 786-1 41 969 bp Feature: gene Location: 143141-143401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), phd_fam (TIGR01552), IAT_beta (pfam11924), Big_1 (pfam02369), Invasin_D3 (pfam09134)
RVT-UG4, rve_2 (pfam13333), RelE (pfam06296), CaiF_GrlA (pfam07180), HTH_23 (pfam13384), InsE (COG2963)

Seq: CP019189.1 Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 chromosome, complete genome (4876720 bp)
Overview 1 RT 1: 92279-99522 bp Neighborhood of RT #1 [92279, 99524] CsgD HTH_Tnp_1 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 92279-92896 bp Ori: AUM38484.1 Feature: domain Description: CsgD Location: 92699-92873 bp Feature: domain Description: CsgD Location: 92 699-92 873 bp Feature: gene Location: 94149-94488 bp Feature: domain Description: HTH_Tnp_1 Location: 94164-94281 bp Feature: domain Description: HTH_Tnp_1 Location: 94164-942 81 bp Feature: gene Location: 94636-96243 bp Ori: AUM38485.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94927-95524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9492 7-9552 4 bp Feature: domain Description: TIR_2 Location: 95848-96208 bp Feature: domain Description: TIR_2 Location: 95848-962 08 bp Feature: gene Location: 96856-99189 bp Ori: AUM38486.1 Feature: domain Description: Prim_Zn_Ribbon Location: 96946-97054 bp Feature: domain Description: Prim_Zn_Ribbon Location: 96946-97054 bp Feature: domain Description: COG3378 Location: 97672-99181 bp Feature: domain Description: COG3378 Location: 97672 -99181 bp Feature: gene Location: 99204-99524 bp Ori: AUM38487.1 Feature: domain Description: DUF5375 Location: 99207-99522 bp Feature: domain Description: DUF5375 Location: 992 07-9952 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsgD (COG2771), HTH_Tnp_1 (pfam01527), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)