myRT

myRT report for GCA_000497505.1_ASM49750v1

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Seq: CP006737.1 Shigella dysenteriae 1617 plasmid pSLG231, complete sequence (177681 bp)
Overview 1 RT 1: 28148-31001 bp 2 RT 2: 86407-89647 bp Neighborhood of RT #1 [28148, 31009] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 PHA02517 Neighborhood of RT #2 [86407, 89691] PRK08943 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 28148-28633 bp Ori: AHA69014.1 Feature: domain Description: COG3547 Location: 28166-28619 bp Feature: domain Description: COG3547 Location: 281 66-2861 9 bp Feature: gene Location: 28660-28806 bp Ori: AHA69015.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 28672-28783 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 28672-28783 bp Feature: gene Location: 28922-30154 bp Ori: AHA69016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29123-29777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 23-29777 bp Feature: domain Description: GIIM Note: maturase Location: 29855-30077 bp Feature: domain Description: GIIM Note: maturase Location: 29855-30077 bp Feature: gene Location: 30616-30753 bp Ori: AHA69017.1 Feature: domain Description: DDE_Tnp_IS66 Location: 30628-30727 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30628-30727 bp Feature: gene Location: 30854-31009 bp Ori: AHA69018.1 Feature: domain Description: PHA02517 Location: 30857-31001 bp Feature: domain Description: PHA0251 7 Location: 30857-31 001 bp Feature: gene Location: 86407-87351 bp Ori: AHA69128.1 Feature: domain Description: PRK08943 Location: 86410-87346 bp Feature: domain Description: PRK08943 Location: 8641 0-87346 bp Feature: gene Location: 87525-88193 bp Ori: AHA69129.1 Feature: domain Description: HTH_23 Location: 87633-87720 bp Feature: domain Description: HTH_23 Location: 87633-87720 bp Feature: domain Description: InsE Location: 87852-88044 bp Feature: domain Description: InsE Location: 87852-88044 bp Feature: gene Location: 88335-88643 bp Ori: AHA69130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88344-88635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88344-88635 bp Feature: gene Location: 88605-88985 bp Feature: gene Location: 88999-89691 bp Ori: AHA69132.1 Feature: domain Description: DDE_Tnp_1 Location: 89005-89647 bp Feature: domain Description: DDE_Tnp_1 Location: 89005-89647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_23 (pfam13384), InsE (COG2963), DDE_Tnp_1 (pfam01609)

Seq: CP006736.1 Shigella dysenteriae 1617, complete genome (4302517 bp)
Overview 1 RT 1: 3753849-3756430 bp Neighborhood of RT #1 [3753849, 3756435] slmA RVT-Retrons pyrE Feature: gene Location: 3753849-3754487 bp Ori: AHA68150.1 Feature: domain Description: slmA Location: 3753897-3754473 bp Feature: domain Description: slmA Location: 3753897-3754473 bp Feature: gene Location: 3754533-3754730 bp Feature: gene Location: 3754816-3755325 bp Ori: AHA68152.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3754822-3755317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 375482 2 -3755317 bp Feature: gene Location: 3755329-3755493 bp Feature: gene Location: 3755779-3756435 bp Ori: AHA68154.1 Feature: domain Description: pyrE Location: 3755797-3756430 bp Feature: domain Description: pyrE Location: 3755797-3756430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)