myRT

myRT report for GCA_000498675.1_ASM49867v1

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Seq: CP006811.1 Lactobacillus johnsonii N6.2, complete genome (1887251 bp)
Overview 1 RT 1: 58202-77002 bp 2 RT 2: 453254-457948 bp 3 RT 3: 499261-504858 bp 4 RT 4: 606606-611165 bp 5 RT 5: 637367-642264 bp 6 RT 6: 660289-665137 bp 7 RT 7: 702949-709686 bp 8 RT 8: 1142437-1150569 bp 9 RT 9: 1307469-1311181 bp 10 RT 10: 1423938-1428746 bp 11 RT 11: 1437795-1443644 bp 12 RT 12: 1565516-1570913 bp 13 RT 13: 1740438-1743977 bp Neighborhood of RT #1 [58202, 77031] YSIRK_signal Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 MucBP_2 Mub_B2 Mub_B2 MucBP_2 Gram_pos_anchor MucBP_2 Mub_B2 MucBP_2 Mub_B2 Mub_B2 Mub_B2 MucBP_2 RVT-GII GIIM 2A0307_GadC LysR Neighborhood of RT #2 [453254, 457968] RVT-GII GIIM Ac76 HATPase_AgrC-ComD-like Tra8 Neighborhood of RT #3 [499261, 504899] PRK00865 PRK14822 RVT-GII GIIM PRK00180 MscS Neighborhood of RT #4 [606606, 611464] HisM HisM RVT-GII GIIM DUF4097 Neighborhood of RT #5 [637367, 642290] phoU_full RVT-GII GIIM YfcC Dps Neighborhood of RT #6 [660289, 665178] CelB RVT-GII GIIM wecB Neighborhood of RT #7 [702949, 709691] HTH_GlnR-like PBP2_Lactococcal_OppA_like RVT-GII GIIM Putative_PNPOx Peptidase_C1_2 Neighborhood of RT #8 [1142437, 1150583] SIR2-like RVT-AbiA HEPN_AbiA_CTD RmlD_sub_bind dTDP_sugar_isom Neighborhood of RT #9 [1307469, 1311246] YxjI DHAK_reg RVT-GII GIIM Acetyltransf_1 Neighborhood of RT #10 [1423938, 1428772] AcyP PRK02463 RVT-GII GIIM HK_WalK HK_WalK Neighborhood of RT #11 [1437795, 1443655] CcmA LytT RVT-GII GIIM thrS Neighborhood of RT #12 [1565516, 1570913] TerB_N TerB_C RVT-GII GIIM Neighborhood of RT #13 [1740438, 1744237] SsuE SsuE RVT-GII GIIM AcrR Feature: gene Location: 58202-69322 bp Ori: AHL69797.1 Feature: domain Description: YSIRK_signal Location: 58238-58346 bp Feature: domain Description: YSIRK_signal Location: 58238-58346 bp Feature: domain Description: Mub_B2 Location: 60641-60929 bp Feature: domain Description: Mub_B2 Location: 60641 -60929 bp Feature: domain Description: MucBP_2 Location: 61127-61394 bp Feature: domain Description: MucBP_2 Location: 61 1 27-61 394 bp Feature: domain Description: Mub_B2 Location: 61460-61679 bp Feature: domain Description: Mub_B2 Location: 61 460-61 679 bp Feature: domain Description: MucBP_2 Location: 61994-62210 bp Feature: domain Description: MucBP_2 Location: 61 994-6221 0 bp Feature: domain Description: Mub_B2 Location: 62327-62555 bp Feature: domain Description: Mub_B2 Location: 62327-62555 bp Feature: domain Description: MucBP_2 Location: 62705-62912 bp Feature: domain Description: MucBP_2 Location: 62705-6291 2 bp Feature: domain Description: Mub_B2 Location: 63029-63251 bp Feature: domain Description: Mub_B2 Location: 63029-63251 bp Feature: domain Description: MucBP_2 Location: 63404-63557 bp Feature: domain Description: MucBP_2 Location: 63404-63557 bp Feature: domain Description: Mub_B2 Location: 63734-63932 bp Feature: domain Description: Mub_B2 Location: 63734-63932 bp Feature: domain Description: MucBP_2 Location: 64220-64445 bp Feature: domain Description: MucBP_2 Location: 64220-64445 bp Feature: domain Description: Mub_B2 Location: 64559-64757 bp Feature: domain Description: Mub_B2 Location: 64559-64757 bp Feature: domain Description: MucBP_2 Location: 65045-65273 bp Feature: domain Description: MucBP_2 Location: 65045-65273 bp Feature: domain Description: Mub_B2 Location: 65336-65555 bp Feature: domain Description: Mub_B2 Location: 65336-65555 bp Feature: domain Description: MucBP_2 Location: 65837-66062 bp Feature: domain Description: MucBP_2 Location: 65837-66062 bp Feature: domain Description: Mub_B2 Location: 66176-66374 bp Feature: domain Description: Mub_B2 Location: 661 76-66374 bp Feature: domain Description: MucBP_2 Location: 66662-66887 bp Feature: domain Description: MucBP_2 Location: 66662-66887 bp Feature: domain Description: Mub_B2 Location: 67001-67199 bp Feature: domain Description: Mub_B2 Location: 67001 -671 99 bp Feature: domain Description: MucBP_2 Location: 67487-67712 bp Feature: domain Description: MucBP_2 Location: 67487-6771 2 bp Feature: domain Description: Mub_B2 Location: 67826-68024 bp Feature: domain Description: Mub_B2 Location: 67826-68024 bp Feature: domain Description: Mub_B2 Location: 68330-68489 bp Feature: domain Description: Mub_B2 Location: 68330-68489 bp Feature: domain Description: MucBP_2 Location: 68786-69020 bp Feature: domain Description: MucBP_2 Location: 68786-69020 bp Feature: domain Description: Gram_pos_anchor Location: 69188-69314 bp Feature: domain Description: Gram_pos_anchor Location: 691 88-6931 4 bp Feature: gene Location: 69481-72432 bp Ori: AHA96549.1 Feature: domain Description: MucBP_2 Location: 69520-69742 bp Feature: domain Description: MucBP_2 Location: 69520-69742 bp Feature: domain Description: Mub_B2 Location: 69814-70003 bp Feature: domain Description: Mub_B2 Location: 6981 4-70003 bp Feature: domain Description: MucBP_2 Location: 70099-70333 bp Feature: domain Description: MucBP_2 Location: 70099-70333 bp Feature: domain Description: Mub_B2 Location: 70405-70600 bp Feature: domain Description: Mub_B2 Location: 70405-70600 bp Feature: domain Description: Mub_B2 Location: 70939-71146 bp Feature: domain Description: Mub_B2 Location: 70939-71 1 46 bp Feature: domain Description: Mub_B2 Location: 71482-71686 bp Feature: domain Description: Mub_B2 Location: 71 482-71 686 bp Feature: domain Description: MucBP_2 Location: 72067-72298 bp Feature: domain Description: MucBP_2 Location: 72067-72298 bp Feature: gene Location: 73036-74331 bp Ori: AHA96550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73237-73855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73237-73855 bp Feature: domain Description: GIIM Note: maturase Location: 73909-74119 bp Feature: domain Description: GIIM Note: maturase Location: 73909-741 1 9 bp Feature: gene Location: 74492-75952 bp Ori: AHA96551.1 Feature: domain Description: 2A0307_GadC Location: 74543-75920 bp Feature: domain Description: 2A0307_GadC Location: 74543-75920 bp Feature: gene Location: 76105-77031 bp Ori: AHA96552.1 Feature: domain Description: LysR Location: 76147-77002 bp Feature: domain Description: LysR Location: 761 47-77002 bp Feature: gene Location: 453254-453607 bp Feature: gene Location: 453742-453861 bp Feature: gene Location: 454303-455598 bp Ori: AHA96901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454504-455122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454504-4551 22 bp Feature: domain Description: GIIM Note: maturase Location: 455176-455386 bp Feature: domain Description: GIIM Note: maturase Location: 4551 76-455386 bp Feature: gene Location: 455736-456851 bp Ori: AHA96902.1 Feature: domain Description: Ac76 Location: 456165-456306 bp Feature: domain Description: Ac76 Location: 4561 65-456306 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 456576-456819 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 456576-45681 9 bp Feature: gene Location: 456919-457968 bp Ori: AHA96903.1 Feature: domain Description: Tra8 Location: 456958-457948 bp Feature: domain Description: Tra8 Location: 456958-457948 bp Feature: gene Location: 499261-500061 bp Ori: AHA96939.1 Feature: domain Description: PRK00865 Location: 499267-500020 bp Feature: domain Description: PRK00865 Location: 499267-500020 bp Feature: gene Location: 500064-500687 bp Ori: AHA96940.1 Feature: domain Description: PRK14822 Location: 500067-500673 bp Feature: domain Description: PRK1 4822 Location: 500067-500673 bp Feature: gene Location: 501296-502591 bp Ori: AHA96941.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501497-502115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 497-5021 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 502169-502379 bp Feature: domain Description: GIIM Note: maturase Location: 5021 69-502379 bp Feature: gene Location: 502779-503957 bp Ori: AHA96942.1 Feature: domain Description: PRK00180 Location: 502785-503952 bp Feature: domain Description: PRK001 80 Location: 502785-503952 bp Feature: gene Location: 504003-504899 bp Ori: AHA96943.1 Feature: domain Description: MscS Location: 504090-504858 bp Feature: domain Description: MscS Location: 504090-504858 bp Feature: gene Location: 606606-607244 bp Ori: AHA97024.1 Feature: domain Description: HisM Location: 606630-607239 bp Feature: domain Description: HisM Location: 606630-607239 bp Feature: gene Location: 607258-607908 bp Ori: AHA97025.1 Feature: domain Description: HisM Location: 607294-607906 bp Feature: domain Description: HisM Location: 607294-607906 bp Feature: gene Location: 608505-609800 bp Ori: AHA97026.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608706-609324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608706-609324 bp Feature: domain Description: GIIM Note: maturase Location: 609378-609588 bp Feature: domain Description: GIIM Note: maturase Location: 609378-609588 bp Feature: gene Location: 610032-610421 bp Feature: gene Location: 610670-611464 bp Ori: AHA97028.1 Feature: domain Description: DUF4097 Location: 610694-611165 bp Feature: domain Description: DUF4097 Location: 61 0694-61 1 1 65 bp Feature: gene Location: 637367-638050 bp Ori: AHA97060.1 Feature: domain Description: phoU_full Location: 637385-638006 bp Feature: domain Description: phoU_full Location: 637385-638006 bp Feature: gene Location: 638161-638280 bp Feature: gene Location: 638722-640017 bp Ori: AHA97061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 638923-639541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 638923-639541 bp Feature: domain Description: GIIM Note: maturase Location: 639595-639805 bp Feature: domain Description: GIIM Note: maturase Location: 639595-639805 bp Feature: gene Location: 640201-641739 bp Ori: AHA97062.1 Feature: domain Description: YfcC Location: 640219-641728 bp Feature: domain Description: YfcC Location: 64021 9-641 728 bp Feature: gene Location: 641823-642290 bp Ori: AHA97063.1 Feature: domain Description: Dps Location: 641838-642264 bp Feature: domain Description: Dps Location: 641 838-642264 bp Feature: gene Location: 660289-661620 bp Ori: AHA97079.1 Feature: domain Description: CelB Location: 660292-661594 bp Feature: domain Description: CelB Location: 660292-661 594 bp Feature: gene Location: 661791-661910 bp Feature: gene Location: 662352-663647 bp Ori: AHA97080.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662553-663171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662553-6631 71 bp Feature: domain Description: GIIM Note: maturase Location: 663225-663435 bp Feature: domain Description: GIIM Note: maturase Location: 663225-663435 bp Feature: gene Location: 663737-663922 bp Feature: gene Location: 664036-665178 bp Ori: AHA97082.1 Feature: domain Description: wecB Location: 664048-665137 bp Feature: domain Description: wecB Location: 664048-6651 37 bp Feature: gene Location: 702949-703386 bp Ori: AHA97109.1 Feature: domain Description: HTH_GlnR-like Location: 702997-703255 bp Feature: domain Description: HTH_GlnR-like Location: 702997-703255 bp Feature: gene Location: 703473-705227 bp Ori: AHA97110.1 Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 703623-705177 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 703623-7051 77 bp Feature: gene Location: 706196-707491 bp Ori: AHA97111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706397-707015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706397-70701 5 bp Feature: domain Description: GIIM Note: maturase Location: 707069-707279 bp Feature: domain Description: GIIM Note: maturase Location: 707069-707279 bp Feature: gene Location: 707849-708214 bp Ori: AHA97112.1 Feature: domain Description: Putative_PNPOx Location: 707876-708134 bp Feature: domain Description: Putative_PNPOx Location: 707876-7081 34 bp Feature: gene Location: 708375-709691 bp Ori: AHA97113.1 Feature: domain Description: Peptidase_C1_2 Location: 708387-709686 bp Feature: domain Description: Peptidase_C1 _2 Location: 708387-709686 bp Feature: gene Location: 1142437-1142859 bp Feature: gene Location: 1143591-1146407 bp Ori: AHA98167.1 Feature: domain Description: SIR2-like Location: 1143669-1144254 bp Feature: domain Description: SIR2-like Location: 1 1 43669-1 1 44254 bp Feature: gene Location: 1146849-1148774 bp Ori: AHA98168.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1147233-1147743 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 1 47233-1 1 47743 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1148382-1148754 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1 1 48382-1 1 48754 bp Feature: gene Location: 1148972-1149958 bp Ori: AHA97485.1 Feature: domain Description: RmlD_sub_bind Location: 1148975-1149923 bp Feature: domain Description: RmlD_sub_bind Location: 1 1 48975-1 1 49923 bp Feature: gene Location: 1149975-1150583 bp Ori: AHA97486.1 Feature: domain Description: dTDP_sugar_isom Location: 1150014-1150569 bp Feature: domain Description: dTDP_sugar_isom Location: 1 1 5001 4-1 1 50569 bp Feature: gene Location: 1307469-1307984 bp Ori: AHA97638.1 Feature: domain Description: YxjI Location: 1307508-1307904 bp Feature: domain Description: YxjI Location: 1 307508-1 307904 bp Feature: gene Location: 1307981-1308550 bp Ori: AHA97639.1 Feature: domain Description: DHAK_reg Location: 1308011-1308338 bp Feature: domain Description: DHAK_reg Location: 1 30801 1 -1 308338 bp Feature: gene Location: 1308776-1310071 bp Ori: AHA97640.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308977-1309595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 308977-1 309595 bp Feature: domain Description: GIIM Note: maturase Location: 1309649-1309859 bp Feature: domain Description: GIIM Note: maturase Location: 1 309649-1 309859 bp Feature: gene Location: 1310247-1310357 bp Feature: gene Location: 1310677-1311246 bp Ori: AHA97641.1 Feature: domain Description: Acetyltransf_1 Location: 1310827-1311181 bp Feature: domain Description: Acetyltransf_1 Location: 1 31 0827-1 31 1 1 81 bp Feature: gene Location: 1423938-1424213 bp Ori: AHA97738.1 Feature: domain Description: AcyP Location: 1423941-1424211 bp Feature: domain Description: AcyP Location: 1 423941 -1 42421 1 bp Feature: gene Location: 1424277-1425260 bp Ori: AHA97739.1 Feature: domain Description: PRK02463 Location: 1424280-1425237 bp Feature: domain Description: PRK02463 Location: 1 424280-1 425237 bp Feature: gene Location: 1425344-1426639 bp Ori: AHA97740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1425545-1426163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 425545-1 4261 63 bp Feature: domain Description: GIIM Note: maturase Location: 1426217-1426427 bp Feature: domain Description: GIIM Note: maturase Location: 1 42621 7-1 426427 bp Feature: gene Location: 1426815-1426925 bp Feature: gene Location: 1427240-1428772 bp Ori: AHA97741.1 Feature: domain Description: HK_WalK Location: 1427714-1428077 bp Feature: domain Description: HK_WalK Location: 1 42771 4-1 428077 bp Feature: domain Description: HK_WalK Location: 1428077-1428746 bp Feature: domain Description: HK_WalK Location: 1 428077-1 428746 bp Feature: gene Location: 1437795-1438757 bp Ori: AHA98197.1 Feature: domain Description: CcmA Location: 1437804-1438695 bp Feature: domain Description: CcmA Location: 1 437804-1 438695 bp Feature: gene Location: 1439192-1439626 bp Ori: AHA97754.1 Feature: domain Description: LytT Location: 1439261-1439624 bp Feature: domain Description: LytT Location: 1 439261 -1 439624 bp Feature: gene Location: 1439814-1441109 bp Ori: AHA97755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440015-1440633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44001 5-1 440633 bp Feature: domain Description: GIIM Note: maturase Location: 1440687-1440897 bp Feature: domain Description: GIIM Note: maturase Location: 1 440687-1 440897 bp Feature: gene Location: 1441285-1441395 bp Feature: gene Location: 1441724-1443655 bp Ori: AHA97756.1 Feature: domain Description: thrS Location: 1441736-1443644 bp Feature: domain Description: thrS Location: 1 441 736-1 443644 bp Feature: gene Location: 1565516-1567399 bp Ori: AHA97855.1 Feature: domain Description: TerB_N Location: 1566005-1566662 bp Feature: domain Description: TerB_N Location: 1 566005-1 566662 bp Feature: domain Description: TerB_C Location: 1566980-1567373 bp Feature: domain Description: TerB_C Location: 1 566980-1 567373 bp Feature: gene Location: 1568414-1568839 bp Feature: gene Location: 1569036-1570331 bp Ori: AHA97857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1569237-1569855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 569237-1 569855 bp Feature: domain Description: GIIM Note: maturase Location: 1569909-1570119 bp Feature: domain Description: GIIM Note: maturase Location: 1 569909-1 5701 1 9 bp Feature: gene Location: 1570507-1570617 bp Feature: gene Location: 1570773-1570913 bp Feature: gene Location: 1740438-1740992 bp Ori: AHA97985.1 Feature: domain Description: SsuE Location: 1740441-1740984 bp Feature: domain Description: SsuE Location: 1 740441 -1 740984 bp Feature: gene Location: 1741005-1741541 bp Ori: AHA97986.1 Feature: domain Description: SsuE Location: 1741008-1741524 bp Feature: domain Description: SsuE Location: 1 741 008-1 741 524 bp Feature: gene Location: 1741710-1743005 bp Ori: AHA97987.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741911-1742529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 91 1 -1 742529 bp Feature: domain Description: GIIM Note: maturase Location: 1742583-1742793 bp Feature: domain Description: GIIM Note: maturase Location: 1 742583-1 742793 bp Feature: gene Location: 1743181-1743291 bp Feature: gene Location: 1743614-1744237 bp Ori: AHA97988.1 Feature: domain Description: AcrR Location: 1743632-1743977 bp Feature: domain Description: AcrR Location: 1 743632-1 743977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSIRK_signal (TIGR01168), Mub_B2 (pfam17966), MucBP_2 (pfam17965), Gram_pos_anchor (pfam00746), RVT-GII, GIIM (pfam08388), 2A0307_GadC (TIGR00910), LysR (COG0583), Ac76 (pfam05814), HATPase_AgrC-ComD-like (cd16935)
Tra8 (COG2826), PRK00865 (glutamate racemase; Provisional), PRK14822 (XTP/dITP diphosphatase), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), MscS (COG0668), HisM (COG0765), DUF4097 (pfam13349), phoU_full (TIGR02135), YfcC (COG1288), Dps (COG0783)
CelB (COG1455), wecB (TIGR00236), HTH_GlnR-like (cd01105), PBP2_Lactococcal_OppA_like (cd08510), Putative_PNPOx (pfam01243), Peptidase_C1_2 (pfam03051), SIR2-like (cd01406), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RmlD_sub_bind (pfam04321)
dTDP_sugar_isom (pfam00908), YxjI (COG4894), DHAK_reg (TIGR02366), Acetyltransf_1 (pfam00583), AcyP (COG1254), PRK02463 (OxaA-like protein precursor; Provisional), HK_WalK (NF033092), CcmA (COG4133), LytT (COG3279), thrS (TIGR00418)
TerB_N (pfam13208), TerB_C (pfam15615), SsuE (COG0431), AcrR (COG1309)