myRT

myRT report for GCA_000506785.4_ASM50678v4

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Seq: CP011966.3 Clostridium beijerinckii NRRL B-598 chromosome, complete genome (6186993 bp)
Overview 1 RT 1: 1011828-1015540 bp 2 RT 2: 2587300-2598393 bp 3 RT 3: 5841729-5847277 bp Neighborhood of RT #1 [1011828, 1015569] rve_2 RVT_N RVT-GII GIIM PHA02517 HTH_28 Neighborhood of RT #2 [2587300, 2598398] sigma70-ECF RVT-GII GIIM HNHc RVT-GII HNHc MurNAc-LAA RVT-GII HNHc YdeN Neighborhood of RT #3 [5841729, 5847393] Dcm MurNAc-LAA COG5263 RVT-GII GIIM HNHc sigma70-ECF Feature: gene Location: 1011828-1012250 bp Feature: gene Location: 1012325-1012504 bp Ori: AYK26973.1 Feature: domain Description: rve_2 Location: 1012331-1012496 bp Feature: domain Description: rve_2 Location: 1 01 2331 -1 01 2496 bp Feature: gene Location: 1012688-1014169 bp Ori: ALB47789.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1012760-1013003 bp Feature: domain Description: RVT_N Location: 1 01 2760-1 01 3003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013048-1013708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 3048-1 01 3708 bp Feature: domain Description: GIIM Note: maturase Location: 1013759-1013996 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 3759-1 01 3996 bp Feature: gene Location: 1014695-1015309 bp Ori: AYK26974.1 Feature: domain Description: PHA02517 Location: 1014842-1015232 bp Feature: domain Description: PHA0251 7 Location: 1 01 4842-1 01 5232 bp Feature: gene Location: 1015411-1015569 bp Ori: AYK26975.1 Feature: domain Description: HTH_28 Location: 1015438-1015540 bp Feature: domain Description: HTH_28 Location: 1 01 5438-1 01 5540 bp Feature: gene Location: 2587300-2587887 bp Ori: ALB46500.1 Feature: domain Description: sigma70-ECF Location: 2587357-2587771 bp Feature: domain Description: sigma70-ECF Location: 2587357-2587771 bp Feature: gene Location: 2588200-2588292 bp Feature: gene Location: 2589090-2590841 bp Ori: ALB48730.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2589348-2590044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2589348-2590044 bp Feature: domain Description: GIIM Note: maturase Location: 2590122-2590311 bp Feature: domain Description: GIIM Note: maturase Location: 25901 22-259031 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2590596-2590731 bp Feature: domain Description: HNHc Note: nucleases Location: 2590596-2590731 bp Feature: gene Location: 2590951-2591049 bp Feature: gene Location: 2591845-2593605 bp Ori: ALB48729.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2592103-2592808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25921 03-2592808 bp Feature: domain Description: HNHc Note: nucleases Location: 2593363-2593495 bp Feature: domain Description: HNHc Note: nucleases Location: 2593363-2593495 bp Feature: gene Location: 2593624-2593710 bp Feature: gene Location: 2593714-2594288 bp Feature: domain Description: MurNAc-LAA Location: 2593729-2593984 bp Feature: domain Description: MurNAc-LAA Location: 2593729-2593984 bp Feature: gene Location: 2595065-2596825 bp Ori: AYK27062.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2595323-2596028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2595323-2596028 bp Feature: domain Description: HNHc Note: nucleases Location: 2596583-2596715 bp Feature: domain Description: HNHc Note: nucleases Location: 2596583-259671 5 bp Feature: gene Location: 2596934-2597071 bp Feature: gene Location: 2597829-2598398 bp Ori: ALB46499.1 Feature: domain Description: YdeN Location: 2597838-2598393 bp Feature: domain Description: YdeN Location: 2597838-2598393 bp Feature: gene Location: 5841729-5842982 bp Ori: ALB48617.2 Feature: domain Description: Dcm Location: 5841924-5842980 bp Feature: domain Description: Dcm Location: 5841 924-5842980 bp Feature: gene Location: 5843060-5843860 bp Ori: AYK27057.1 Feature: domain Description: MurNAc-LAA Location: 5843069-5843483 bp Feature: domain Description: MurNAc-LAA Location: 5843069-5843483 bp Feature: domain Description: COG5263 Location: 5843543-5843855 bp Feature: domain Description: COG5263 Location: 5843543-5843855 bp Feature: gene Location: 5843970-5845721 bp Ori: ALB48616.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5844228-5844924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5844228-5844924 bp Feature: domain Description: GIIM Note: maturase Location: 5845002-5845191 bp Feature: domain Description: GIIM Note: maturase Location: 5845002-58451 91 bp Feature: domain Description: HNHc Note: nucleases Location: 5845476-5845611 bp Feature: domain Description: HNHc Note: nucleases Location: 5845476-584561 1 bp Feature: gene Location: 5846519-5846611 bp Feature: gene Location: 5846806-5847393 bp Ori: ALB44043.1 Feature: domain Description: sigma70-ECF Location: 5846866-5847277 bp Feature: domain Description: sigma70-ECF Location: 5846866-5847277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_28 (pfam13518), sigma70-ECF (TIGR02937), HNHc (smart00507), MurNAc-LAA (cl02713), YdeN (COG3545)
Dcm (COG0270), COG5263 (Glucan-binding domain (YG repeat) )