myRT

myRT report for GCA_000507245.1_ASM50724v1

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Seq: CP006939.1 Salinispira pacifica strain L21-RPul-D2, complete genome (3782798 bp)
Overview 1 RT 1: 119832-127832 bp 2 RT 2: 132357-137565 bp 3 RT 3: 253251-258679 bp 4 RT 4: 682306-688292 bp 5 RT 5: 1405322-1413131 bp 6 RT 6: 1774053-1782493 bp 7 RT 7: 1867483-1872524 bp 8 RT 8: 1960547-1968100 bp 9 RT 9: 2176401-2182616 bp 10 RT 10: 2439113-2444948 bp 11 RT 11: 2596286-2602099 bp 12 RT 12: 3461373-3467815 bp 13 RT 13: 3726952-3731673 bp Neighborhood of RT #1 [119832, 127832] AmyAc_bac2_AmyA IPT_CGTD RVT-GII GIIM Neighborhood of RT #2 [132357, 137567] Tas RVT-GII GIIM COG4586 COG4587 Neighborhood of RT #3 [253251, 260775] GlnA RVT-GII GIIM FN3 FN3 Peptidase_C14 Neighborhood of RT #4 [682306, 688292] LivF PBP1_ABC_ligand_binding_like_8 RVT-GII GIIM PRK06840 Neighborhood of RT #5 [1405322, 1413133] PRK06939 RNase_Y RVT-GII GIIM COG3920 Tpp15 Tpp15 Neighborhood of RT #6 [1774053, 1782510] TPR TPR RVT-GII GIIM nrdR PRK11716 Neighborhood of RT #7 [1867483, 1872721] CM_1 PRK05716 RVT-GII GIIM YkgJ TaR3-like_MBL-fold Neighborhood of RT #8 [1960547, 1968543] Adenylsucc_synt PRK05567 RVT-GII GIIM Adenylsuccinate_lyase_like Pallilysin Neighborhood of RT #9 [2176401, 2182616] DUF772 DDE_Tnp_1_6 VagC RVT-GII Neighborhood of RT #10 [2439113, 2445118] FGE-sulfatase InsE RVT-GII GIIM Tra5 rve_3 Neighborhood of RT #11 [2596286, 2602113] dcd RVT-GII GIIM DUF772 DDE_Tnp_1_6 RVT-GII Fer4 Fer4 FolB Neighborhood of RT #12 [3461373, 3467901] GT35_Glycogen_Phosphorylase RVT-GII GIIM SlpA NTP_transferase Neighborhood of RT #13 [3726952, 3731702] GDPD_cytoplasmic_ScUgpQ2_like RVT-GII RhaT Feature: gene Location: 119832-121577 bp Ori: AHC13547.1 Feature: domain Description: AmyAc_bac2_AmyA Location: 120036-121245 bp Feature: domain Description: AmyAc_bac2_AmyA Location: 1 20036-1 21 245 bp Feature: gene Location: 121669-122517 bp Ori: AHC13548.1 Feature: domain Description: IPT_CGTD Location: 121825-121993 bp Feature: domain Description: IPT_CGTD Location: 1 21 825-1 21 993 bp Feature: gene Location: 123368-124657 bp Ori: AHC13549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123599-124217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23599-1 2421 7 bp Feature: domain Description: GIIM Note: maturase Location: 124262-124490 bp Feature: domain Description: GIIM Note: maturase Location: 1 24262-1 24490 bp Feature: gene Location: 124787-125434 bp Feature: gene Location: 125574-127832 bp Feature: gene Location: 132357-133340 bp Ori: AHC13556.1 Feature: domain Description: Tas Location: 132360-133323 bp Feature: domain Description: Tas Location: 1 32360-1 33323 bp Feature: gene Location: 133342-133515 bp Feature: gene Location: 134338-135627 bp Ori: AHC13558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134569-135187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34569-1 351 87 bp Feature: domain Description: GIIM Note: maturase Location: 135232-135460 bp Feature: domain Description: GIIM Note: maturase Location: 1 35232-1 35460 bp Feature: gene Location: 135805-136791 bp Ori: AHC13559.1 Feature: domain Description: COG4586 Location: 135811-136759 bp Feature: domain Description: COG4586 Location: 1 3581 1 -1 36759 bp Feature: gene Location: 136779-137567 bp Ori: AHC13560.1 Feature: domain Description: COG4587 Location: 136812-137565 bp Feature: domain Description: COG4587 Location: 1 3681 2-1 37565 bp Feature: gene Location: 253251-253385 bp Feature: gene Location: 253418-254821 bp Ori: AHC13675.1 Feature: domain Description: GlnA Location: 253436-254816 bp Feature: domain Description: GlnA Location: 253436-25481 6 bp Feature: gene Location: 255669-256958 bp Ori: AHC13676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255900-256518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255900-25651 8 bp Feature: domain Description: GIIM Note: maturase Location: 256563-256791 bp Feature: domain Description: GIIM Note: maturase Location: 256563-256791 bp Feature: gene Location: 257273-257971 bp Ori: AHC13677.1 Feature: domain Description: FN3 Location: 257441-257681 bp Feature: domain Description: FN3 Location: 257441 -257681 bp Feature: domain Description: FN3 Location: 257729-257942 bp Feature: domain Description: FN3 Location: 257729-257942 bp Feature: gene Location: 258106-260775 bp Ori: AHC13678.1 Feature: domain Description: Peptidase_C14 Location: 258262-258679 bp Feature: domain Description: Peptidase_C1 4 Location: 258262-258679 bp Feature: gene Location: 682306-683019 bp Ori: AHC14061.1 Feature: domain Description: LivF Location: 682315-683014 bp Feature: domain Description: LivF Location: 68231 5-68301 4 bp Feature: gene Location: 683101-684324 bp Ori: AHC14062.1 Feature: domain Description: PBP1_ABC_ligand_binding_like_8 Location: 683194-684256 bp Feature: domain Description: PBP1 _ABC_ligand_binding_like_8 Location: 6831 94-684256 bp Feature: gene Location: 685135-686424 bp Ori: AHC14063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685366-685984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685366-685984 bp Feature: domain Description: GIIM Note: maturase Location: 686029-686257 bp Feature: domain Description: GIIM Note: maturase Location: 686029-686257 bp Feature: gene Location: 686568-687581 bp Ori: AHC14064.1 Feature: domain Description: PRK06840 Location: 686574-687576 bp Feature: domain Description: PRK06840 Location: 686574-687576 bp Feature: gene Location: 687735-688292 bp Feature: gene Location: 1405322-1406509 bp Ori: AHC14733.1 Feature: domain Description: PRK06939 Location: 1405331-1406501 bp Feature: domain Description: PRK06939 Location: 1 405331 -1 406501 bp Feature: gene Location: 1407085-1408176 bp Ori: AHC14734.1 Feature: domain Description: RNase_Y Location: 1407088-1408174 bp Feature: domain Description: RNase_Y Location: 1 407088-1 4081 74 bp Feature: gene Location: 1409009-1410298 bp Ori: AHC14735.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1409240-1409858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 409240-1 409858 bp Feature: domain Description: GIIM Note: maturase Location: 1409903-1410131 bp Feature: domain Description: GIIM Note: maturase Location: 1 409903-1 41 01 31 bp Feature: gene Location: 1410438-1412285 bp Ori: AHC14736.1 Feature: domain Description: COG3920 Location: 1411560-1412202 bp Feature: domain Description: COG3920 Location: 1 41 1 560-1 41 2202 bp Feature: gene Location: 1412354-1413133 bp Ori: AHC14737.1 Feature: domain Description: Tpp15 Location: 1412384-1412771 bp Feature: domain Description: Tpp1 5 Location: 1 41 2384-1 41 2771 bp Feature: domain Description: Tpp15 Location: 1412795-1413131 bp Feature: domain Description: Tpp1 5 Location: 1 41 2795-1 41 31 31 bp Feature: gene Location: 1774053-1777019 bp Ori: AHC15046.1 Feature: domain Description: TPR Location: 1775934-1776117 bp Feature: domain Description: TPR Location: 1 775934-1 7761 1 7 bp Feature: domain Description: TPR Location: 1776297-1776570 bp Feature: domain Description: TPR Location: 1 776297-1 776570 bp Feature: gene Location: 1777212-1777373 bp Feature: gene Location: 1778017-1779306 bp Ori: AHC15048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1778248-1778866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 778248-1 778866 bp Feature: domain Description: GIIM Note: maturase Location: 1778911-1779139 bp Feature: domain Description: GIIM Note: maturase Location: 1 77891 1 -1 7791 39 bp Feature: gene Location: 1779423-1779905 bp Ori: AHC15049.1 Feature: domain Description: nrdR Location: 1779426-1779885 bp Feature: domain Description: nrdR Location: 1 779426-1 779885 bp Feature: gene Location: 1781629-1782510 bp Ori: AHC15050.1 Feature: domain Description: PRK11716 Location: 1781707-1782493 bp Feature: domain Description: PRK1 1 71 6 Location: 1 781 707-1 782493 bp Feature: gene Location: 1867483-1867896 bp Ori: AHC15139.1 Feature: domain Description: CM_1 Location: 1867522-1867870 bp Feature: domain Description: CM_1 Location: 1 867522-1 867870 bp Feature: gene Location: 1867889-1868689 bp Ori: AHC15140.1 Feature: domain Description: PRK05716 Location: 1867916-1868645 bp Feature: domain Description: PRK0571 6 Location: 1 86791 6-1 868645 bp Feature: gene Location: 1869833-1871122 bp Ori: AHC15141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870064-1870682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 870064-1 870682 bp Feature: domain Description: GIIM Note: maturase Location: 1870727-1870955 bp Feature: domain Description: GIIM Note: maturase Location: 1 870727-1 870955 bp Feature: gene Location: 1871311-1871751 bp Ori: AHC15142.1 Feature: domain Description: YkgJ Location: 1871344-1871707 bp Feature: domain Description: YkgJ Location: 1 871 344-1 871 707 bp Feature: gene Location: 1871759-1872721 bp Ori: AHC15143.1 Feature: domain Description: TaR3-like_MBL-fold Location: 1871771-1872524 bp Feature: domain Description: TaR3-like_MBL-fold Location: 1 871 771 -1 872524 bp Feature: gene Location: 1960547-1961776 bp Ori: AHC15218.1 Feature: domain Description: Adenylsucc_synt Location: 1960559-1961747 bp Feature: domain Description: Adenylsucc_synt Location: 1 960559-1 961 747 bp Feature: gene Location: 1961788-1963224 bp Ori: AHC15219.1 Feature: domain Description: PRK05567 Location: 1961803-1963219 bp Feature: domain Description: PRK05567 Location: 1 961 803-1 96321 9 bp Feature: gene Location: 1963394-1964683 bp Ori: AHC15220.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1963625-1964243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 963625-1 964243 bp Feature: domain Description: GIIM Note: maturase Location: 1964288-1964516 bp Feature: domain Description: GIIM Note: maturase Location: 1 964288-1 96451 6 bp Feature: gene Location: 1965489-1966928 bp Ori: AHC15221.1 Feature: domain Description: Adenylsuccinate_lyase_like Location: 1965573-1966779 bp Feature: domain Description: Adenylsuccinate_lyase_like Location: 1 965573-1 966779 bp Feature: gene Location: 1967008-1968543 bp Ori: AHC15222.1 Feature: domain Description: Pallilysin Location: 1967815-1968100 bp Feature: domain Description: Pallilysin Location: 1 96781 5-1 9681 00 bp Feature: gene Location: 2176401-2178035 bp Ori: AHC15405.1 Feature: domain Description: DUF772 Location: 2176578-2176764 bp Feature: domain Description: DUF772 Location: 21 76578-21 76764 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2177607-2177973 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 21 77607-21 77973 bp Feature: gene Location: 2178249-2178476 bp Ori: AHC15406.1 Feature: domain Description: VagC Location: 2178258-2178471 bp Feature: domain Description: VagC Location: 21 78258-21 78471 bp Feature: gene Location: 2180239-2180931 bp Ori: AHC15407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2180242-2180572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 80242-21 80572 bp Feature: gene Location: 2180887-2181561 bp Feature: gene Location: 2182089-2182616 bp Feature: gene Location: 2439113-2440072 bp Ori: AHC15634.1 Feature: domain Description: FGE-sulfatase Location: 2439305-2439935 bp Feature: domain Description: FGE-sulfatase Location: 2439305-2439935 bp Feature: gene Location: 2440572-2440898 bp Ori: AHC15635.1 Feature: domain Description: InsE Location: 2440581-2440890 bp Feature: domain Description: InsE Location: 2440581 -2440890 bp Feature: gene Location: 2442603-2443967 bp Ori: AHC15636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442714-2443446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244271 4-2443446 bp Feature: domain Description: GIIM Note: maturase Location: 2443518-2443722 bp Feature: domain Description: GIIM Note: maturase Location: 244351 8-2443722 bp Feature: gene Location: 2444084-2444527 bp Ori: AHC15637.1 Feature: domain Description: Tra5 Location: 2444093-2444495 bp Feature: domain Description: Tra5 Location: 2444093-2444495 bp Feature: gene Location: 2444744-2445118 bp Ori: AHC15638.1 Feature: domain Description: rve_3 Location: 2444753-2444948 bp Feature: domain Description: rve_3 Location: 2444753-2444948 bp Feature: gene Location: 2596286-2596819 bp Ori: AHC15778.1 Feature: domain Description: dcd Location: 2596289-2596781 bp Feature: domain Description: dcd Location: 2596289-2596781 bp Feature: gene Location: 2596928-2597098 bp Feature: gene Location: 2597353-2598354 bp Ori: AHC15780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597383-2597914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2597383-259791 4 bp Feature: domain Description: GIIM Note: maturase Location: 2597959-2598187 bp Feature: domain Description: GIIM Note: maturase Location: 2597959-25981 87 bp Feature: gene Location: 2598396-2600030 bp Ori: AHC15781.1 Feature: domain Description: DUF772 Location: 2598573-2598759 bp Feature: domain Description: DUF772 Location: 2598573-2598759 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2599602-2599968 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 2599602-2599968 bp Feature: gene Location: 2600180-2600527 bp Ori: AHC15782.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2600411-2600510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260041 1 -260051 0 bp Feature: gene Location: 2601353-2601523 bp Ori: AHC15783.1 Feature: domain Description: Fer4 Location: 2601371-2601428 bp Feature: domain Description: Fer4 Location: 2601 371 -2601 428 bp Feature: domain Description: Fer4 Location: 2601449-2601515 bp Feature: domain Description: Fer4 Location: 2601 449-2601 51 5 bp Feature: gene Location: 2601595-2602113 bp Ori: AHC15784.1 Feature: domain Description: FolB Location: 2601706-2602099 bp Feature: domain Description: FolB Location: 2601 706-2602099 bp Feature: gene Location: 3461373-3463898 bp Ori: AHC16557.1 Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 3461445-3463824 bp Feature: domain Description: GT35_Glycogen_Phosphorylase Location: 3461 445-3463824 bp Feature: gene Location: 3463926-3464060 bp Feature: gene Location: 3464139-3465428 bp Ori: AHC16559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3464370-3464988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3464370-3464988 bp Feature: domain Description: GIIM Note: maturase Location: 3465033-3465261 bp Feature: domain Description: GIIM Note: maturase Location: 3465033-3465261 bp Feature: gene Location: 3466315-3466854 bp Ori: AHC16560.1 Feature: domain Description: SlpA Location: 3466354-3466786 bp Feature: domain Description: SlpA Location: 3466354-3466786 bp Feature: gene Location: 3466996-3467901 bp Ori: AHC16561.1 Feature: domain Description: NTP_transferase Location: 3467014-3467815 bp Feature: domain Description: NTP_transferase Location: 346701 4-346781 5 bp Feature: gene Location: 3726952-3727413 bp Feature: gene Location: 3727516-3728592 bp Ori: AHC16794.1 Feature: domain Description: GDPD_cytoplasmic_ScUgpQ2_like Location: 3727687-3728572 bp Feature: domain Description: GDPD_cytoplasmic_ScUgpQ2_like Location: 3727687-3728572 bp Feature: gene Location: 3728680-3729372 bp Ori: AHC16795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3728683-3729013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3728683-372901 3 bp Feature: gene Location: 3729328-3730002 bp Feature: gene Location: 3730809-3731702 bp Ori: AHC16797.1 Feature: domain Description: RhaT Location: 3730815-3731673 bp Feature: domain Description: RhaT Location: 373081 5-3731 673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmyAc_bac2_AmyA (cd11316), IPT_CGTD (cd00604), RVT-GII, GIIM (pfam08388), Tas (COG0667), COG4586 (ABC-type uncharacterized transport system, ATPase component ), COG4587 (ABC-type uncharacterized transport system, permease component ), GlnA (TIGR00653), FN3 (smart00060), Peptidase_C14 (pfam00656)
LivF (COG0410), PBP1_ABC_ligand_binding_like_8, PRK06840 (3-oxoacyl-ACP synthase), PRK06939 (2-amino-3-ketobutyrate coenzyme A ligase; Provisional), RNase_Y (TIGR03319), COG3920 (Two-component sensor histidine kinase, HisKA and HATPase domains ), Tpp15 (COG4939), TPR (smart00028), nrdR (PRK00464), PRK11716 (HTH-type transcriptional activator IlvY)
CM_1 (pfam07736), PRK05716 (methionine aminopeptidase; Validated), YkgJ (COG0727), TaR3-like_MBL-fold (cd07715), Adenylsucc_synt (smart00788), PRK05567 (inosine 5'-monophosphate dehydrogenase; Reviewed), Adenylsuccinate_lyase_like (cd01595), Pallilysin (pfam18663), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)
VagC (COG4456), FGE-sulfatase (pfam03781), InsE (COG2963), Tra5 (COG2801), rve_3 (pfam13683), dcd (PRK00416), Fer4 (pfam00037), FolB (smart00905), GT35_Glycogen_Phosphorylase (cd04300), SlpA (COG1047)
NTP_transferase (pfam00483), GDPD_cytoplasmic_ScUgpQ2_like (cd08561), RhaT (TIGR00776)