myRT

myRT report for GCA_000508205.1_ASM50820v1

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Seq: CP006852.1 Pseudomonas sp. TKP, complete genome (7012672 bp)
Overview 1 RT 1: 1046392-1052150 bp 2 RT 2: 6957640-6960989 bp Neighborhood of RT #1 [1046392, 1052191] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM ACR3 HTH_CadR-PbrR-like Neighborhood of RT #2 [6957640, 6960989] PRK10431 PRK10319 IS5 RVT-GII GIIM Feature: gene Location: 1046392-1046727 bp Ori: AHC33498.1 Feature: domain Description: TnpB_IS66 Location: 1046410-1046698 bp Feature: domain Description: TnpB_IS66 Location: 1 04641 0-1 046698 bp Feature: gene Location: 1046789-1048117 bp Ori: AHC33499.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1046921-1047128 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 046921 -1 0471 28 bp Feature: domain Description: zf-IS66 Location: 1047167-1047281 bp Feature: domain Description: zf-IS66 Location: 1 0471 67-1 047281 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1047323-1048097 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 047323-1 048097 bp Feature: gene Location: 1048675-1050336 bp Ori: AHC33500.1 Feature: domain Description: RVT_N Location: 1048720-1048963 bp Feature: domain Description: RVT_N Location: 1 048720-1 048963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049008-1049644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 049008-1 049644 bp Feature: domain Description: GIIM Note: maturase Location: 1049701-1049929 bp Feature: domain Description: GIIM Note: maturase Location: 1 049701 -1 049929 bp Feature: gene Location: 1050701-1051663 bp Ori: AHC33501.1 Feature: domain Description: ACR3 Location: 1050716-1051643 bp Feature: domain Description: ACR3 Location: 1 05071 6-1 051 643 bp Feature: gene Location: 1051757-1052191 bp Ori: AHC33502.1 Feature: domain Description: HTH_CadR-PbrR-like Location: 1051769-1052150 bp Feature: domain Description: HTH_CadR-PbrR-like Location: 1 051 769-1 0521 50 bp Feature: gene Location: 6957640-6958743 bp Ori: AHC38814.1 Feature: domain Description: PRK10431 Location: 6957745-6958111 bp Feature: domain Description: PRK1 0431 Location: 6957745-69581 1 1 bp Feature: domain Description: PRK10319 Location: 6958141-6958729 bp Feature: domain Description: PRK1 031 9 Location: 69581 41 -6958729 bp Feature: gene Location: 6958874-6959407 bp Ori: AHC38815.1 Feature: domain Description: IS5 Location: 6958937-6959381 bp Feature: domain Description: IS5 Location: 6958937-6959381 bp Feature: gene Location: 6959404-6960672 bp Ori: AHC38816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6959617-6960274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695961 7-6960274 bp Feature: domain Description: GIIM Note: maturase Location: 6960352-6960574 bp Feature: domain Description: GIIM Note: maturase Location: 6960352-6960574 bp Feature: gene Location: 6960669-6960809 bp Feature: gene Location: 6960882-6960989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACR3 (COG0798), HTH_CadR-PbrR-like (cd04785), PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional)
PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), IS5 (COG3039)