myRT

myRT report for GCA_000512165.1_ASM51216v1

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Seq: CP003999.1 Klebsiella pneumoniae subsp. pneumoniae Kp13 chromosome, complete genome (5307003 bp)
Overview 1 RT 1: 1790879-1797348 bp 2 RT 2: 3141125-3145223 bp 3 RT 3: 3179353-3184925 bp 4 RT 4: 3227709-3231642 bp Neighborhood of RT #1 [1790879, 1797362] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3141125, 3145234] umuC PRK10276 RVT-GII DinI Neighborhood of RT #3 [3179353, 3185296] DUF2207 RVT-Retrons umuC Phage-tail_3 Neighborhood of RT #4 [3227709, 3231642] LexA_DNA_bind PRK10597 RVT-GII Feature: gene Location: 1790879-1792303 bp Ori: AHE43706.1 Gene: sbcB Feature: domain Description: SbcB Location: 1790885-1792301 bp Feature: domain Description: SbcB Location: 1 790885-1 792301 bp Feature: gene Location: 1792478-1793647 bp Ori: AHE43707.1 Gene: dacD Feature: domain Description: dacD Location: 1792487-1793642 bp Feature: domain Description: dacD Location: 1 792487-1 793642 bp Feature: gene Location: 1794164-1795735 bp Ori: AHE43708.1 Gene: retA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1794569-1795259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 794569-1 795259 bp Feature: gene Location: 1795732-1796205 bp Ori: AHE43709.1 Gene: gyrI Feature: domain Description: PRK10016 Location: 1795735-1796194 bp Feature: domain Description: PRK1 001 6 Location: 1 795735-1 7961 94 bp Feature: gene Location: 1796304-1797362 bp Ori: AHE43710.1 Feature: domain Description: YccC Location: 1796310-1797348 bp Feature: domain Description: YccC Location: 1 79631 0-1 797348 bp Feature: gene Location: 3141125-3142390 bp Ori: AHE45089.1 Gene: umuC Feature: domain Description: umuC Location: 3141128-3142388 bp Feature: domain Description: umuC Location: 31 41 1 28-31 42388 bp Feature: gene Location: 3142393-3142812 bp Ori: AHE45090.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3142396-3142807 bp Feature: domain Description: PRK1 0276 Location: 31 42396-31 42807 bp Feature: gene Location: 3142891-3144378 bp Ori: AHE45091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143296-3143986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 43296-31 43986 bp Feature: gene Location: 3144403-3144828 bp Feature: gene Location: 3144992-3145234 bp Ori: AHE45093.1 Gene: msgA Feature: domain Description: DinI Location: 3145043-3145223 bp Feature: domain Description: DinI Location: 31 45043-31 45223 bp Feature: gene Location: 3179353-3180501 bp Ori: AHE45144.1 Feature: domain Description: DUF2207 Location: 3179767-3180253 bp Feature: domain Description: DUF2207 Location: 31 79767-31 80253 bp Feature: gene Location: 3180668-3181369 bp Feature: gene Location: 3181366-3182586 bp Ori: AHE45146.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3181549-3182131 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 81 549-31 821 31 bp Feature: gene Location: 3182983-3183729 bp Ori: AHE45147.1 Feature: domain Description: umuC Location: 3183049-3183727 bp Feature: domain Description: umuC Location: 31 83049-31 83727 bp Feature: gene Location: 3184142-3185296 bp Ori: AHE45148.1 Feature: domain Description: Phage-tail_3 Location: 3184451-3184925 bp Feature: domain Description: Phage-tail_3 Location: 31 84451 -31 84925 bp Feature: gene Location: 3227709-3228206 bp Ori: AHE45198.1 Feature: domain Description: LexA_DNA_bind Location: 3227892-3228081 bp Feature: domain Description: LexA_DNA_bind Location: 3227892-3228081 bp Feature: gene Location: 3228444-3228677 bp Ori: AHE45199.1 Gene: dinI Feature: domain Description: PRK10597 Location: 3228447-3228672 bp Feature: domain Description: PRK1 0597 Location: 3228447-3228672 bp Feature: gene Location: 3228756-3230243 bp Ori: AHE45200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3229161-3229851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32291 61 -3229851 bp Feature: gene Location: 3230669-3230881 bp Feature: gene Location: 3231310-3231642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), DUF2207 (pfam09972), RVT-Retrons
Phage-tail_3 (pfam13550), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: CP004000.1 Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13f, complete sequence (295493 bp)
Overview 1 RT 1: 429-2858 bp 2 RT 2: 39792-43631 bp 3 RT 3: 181419-186921 bp Neighborhood of RT #1 [429, 2858] RVT-GII Neighborhood of RT #2 [39792, 43651] INT_Cre_C RVT-GII HHA Neighborhood of RT #3 [181419, 186929] InsQ RVT-GII PRK10276 umuC Feature: gene Location: 429-1913 bp Ori: AHE47162.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-152 1 bp Feature: gene Location: 2026-2340 bp Feature: gene Location: 2379-2858 bp Feature: gene Location: 39792-40109 bp Feature: gene Location: 40175-41311 bp Ori: AHE47208.1 Feature: domain Description: INT_Cre_C Location: 40598-41252 bp Feature: domain Description: INT_Cre_C Location: 40598-412 52 bp Feature: gene Location: 41397-42884 bp Ori: AHE47209.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41802-42492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41802 -42 492 bp Feature: gene Location: 43181-43378 bp Feature: gene Location: 43397-43651 bp Ori: AHE47211.1 Feature: domain Description: HHA Location: 43448-43631 bp Feature: domain Description: HHA Location: 43448-43631 bp Feature: gene Location: 181419-181733 bp Feature: gene Location: 182535-182972 bp Ori: AHE47388.1 Feature: domain Description: InsQ Location: 182646-182922 bp Feature: domain Description: InsQ Location: 182 646-182 92 2 bp Feature: gene Location: 183666-185150 bp Ori: AHE47389.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184068-184758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184068-184758 bp Feature: gene Location: 185251-185658 bp Ori: AHE47390.1 Gene: samA Feature: domain Description: PRK10276 Location: 185263-185644 bp Feature: domain Description: PRK102 76 Location: 1852 63-185644 bp Feature: gene Location: 185658-186929 bp Ori: AHE47391.1 Gene: samB Feature: domain Description: umuC Location: 185661-186921 bp Feature: domain Description: umuC Location: 185661-18692 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_Cre_C (cd00799), HHA (pfam05321), InsQ (COG0675), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)