myRT

myRT report for GCA_000521505.1_ASM52150v1

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Seq: CP003915.1 Advenella mimigardefordensis DPN7, complete genome (4740516 bp)
Overview 1 RT 1: 858740-864496 bp 2 RT 2: 1223230-1227523 bp 3 RT 3: 1230534-1236601 bp 4 RT 4: 1787273-1791414 bp 5 RT 5: 2501799-2507737 bp 6 RT 6: 2806669-2811782 bp 7 RT 7: 3632329-3638692 bp 8 RT 8: 3715337-3721964 bp 9 RT 9: 4667034-4675733 bp Neighborhood of RT #1 [858740, 864666] CaiB CytC5 CytC5 RVT-GII VirB4_CagE COG4584 Neighborhood of RT #2 [1223230, 1227523] S14_ClpP_1 RVT-GII GIIM Phage_capsid Neighborhood of RT #3 [1230534, 1236774] DUF3168 RVT-GII GIIM Phage_TAC_13 COG5281 tape_meas_lam_C Neighborhood of RT #4 [1787273, 1791414] PRK10664 RVT-GII GIIM MutK MutK Neighborhood of RT #5 [2501799, 2507838] OmpA_C-like RVT-GII GIIM PRK10787 Neighborhood of RT #6 [2806669, 2811784] PRK06602 gram_neg_porins RVT-GII GIIM COG3241 Neighborhood of RT #7 [3632329, 3640554] Aes rve_3 RVT-Retrons DEXHc_RE HELICc Neighborhood of RT #8 [3715337, 3721969] PRK15182 GT_MraY_like RVT-GII GIIM Coq7 PRK10738 Neighborhood of RT #9 [4667034, 4675828] GSDH PRK11790 RVT-GII GIIM PRK00566 Feature: gene Location: 858740-859963 bp Ori: AHG62864.1 Feature: domain Description: CaiB Location: 858752-859952 bp Feature: domain Description: CaiB Location: 858752-859952 bp Feature: gene Location: 860080-861150 bp Ori: AHG62865.1 Feature: domain Description: CytC5 Location: 860254-860587 bp Feature: domain Description: CytC5 Location: 860254-860587 bp Feature: domain Description: CytC5 Location: 860794-861142 bp Feature: domain Description: CytC5 Location: 860794-861 1 42 bp Feature: gene Location: 862387-862635 bp Ori: AHG62866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862396-862612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862396-86261 2 bp Feature: gene Location: 863276-863554 bp Ori: AHG62867.1 Feature: domain Description: VirB4_CagE Location: 863291-863546 bp Feature: domain Description: VirB4_CagE Location: 863291 -863546 bp Feature: gene Location: 863656-864666 bp Ori: AHG62868.1 Feature: domain Description: COG4584 Location: 863659-864496 bp Feature: domain Description: COG4584 Location: 863659-864496 bp Feature: gene Location: 1223230-1224096 bp Ori: AHG63180.1 Feature: domain Description: S14_ClpP_1 Location: 1223347-1223824 bp Feature: domain Description: S1 4_ClpP_1 Location: 1 223347-1 223824 bp Feature: gene Location: 1224140-1224256 bp Feature: gene Location: 1224548-1225918 bp Ori: AHG63182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224881-1225499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 224881 -1 225499 bp Feature: domain Description: GIIM Note: maturase Location: 1225556-1225766 bp Feature: domain Description: GIIM Note: maturase Location: 1 225556-1 225766 bp Feature: gene Location: 1226031-1227221 bp Ori: AHG63183.1 Feature: domain Description: Phage_capsid Location: 1226400-1227210 bp Feature: domain Description: Phage_capsid Location: 1 226400-1 22721 0 bp Feature: gene Location: 1227254-1227523 bp Feature: gene Location: 1230534-1230902 bp Ori: AHG63190.1 Feature: domain Description: DUF3168 Location: 1230573-1230798 bp Feature: domain Description: DUF31 68 Location: 1 230573-1 230798 bp Feature: gene Location: 1230943-1231059 bp Feature: gene Location: 1231351-1232721 bp Ori: AHG63192.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231684-1232302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 231 684-1 232302 bp Feature: domain Description: GIIM Note: maturase Location: 1232359-1232569 bp Feature: domain Description: GIIM Note: maturase Location: 1 232359-1 232569 bp Feature: gene Location: 1233356-1233733 bp Ori: AHG63193.1 Feature: domain Description: Phage_TAC_13 Location: 1233371-1233668 bp Feature: domain Description: Phage_TAC_1 3 Location: 1 233371 -1 233668 bp Feature: gene Location: 1234048-1236774 bp Ori: AHG63194.1 Feature: domain Description: COG5281 Location: 1234420-1235143 bp Feature: domain Description: COG5281 Location: 1 234420-1 2351 43 bp Feature: domain Description: tape_meas_lam_C Location: 1236277-1236601 bp Feature: domain Description: tape_meas_lam_C Location: 1 236277-1 236601 bp Feature: gene Location: 1787273-1787545 bp Ori: AHG63647.1 Feature: domain Description: PRK10664 Location: 1787276-1787543 bp Feature: domain Description: PRK1 0664 Location: 1 787276-1 787543 bp Feature: gene Location: 1787639-1787755 bp Feature: gene Location: 1788047-1789417 bp Ori: AHG63649.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788380-1788998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 788380-1 788998 bp Feature: domain Description: GIIM Note: maturase Location: 1789055-1789265 bp Feature: domain Description: GIIM Note: maturase Location: 1 789055-1 789265 bp Feature: gene Location: 1789771-1790703 bp Ori: AHG63650.1 Feature: domain Description: MutK Location: 1789774-1789858 bp Feature: domain Description: MutK Location: 1 789774-1 789858 bp Feature: domain Description: MutK Location: 1789867-1790689 bp Feature: domain Description: MutK Location: 1 789867-1 790689 bp Feature: gene Location: 1791190-1791414 bp Feature: gene Location: 2501799-2502341 bp Ori: AHG64274.1 Feature: domain Description: OmpA_C-like Location: 2501952-2502195 bp Feature: domain Description: OmpA_C-like Location: 2501 952-25021 95 bp Feature: gene Location: 2502451-2503278 bp Feature: gene Location: 2503492-2504862 bp Ori: AHG64276.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503825-2504443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503825-2504443 bp Feature: domain Description: GIIM Note: maturase Location: 2504500-2504710 bp Feature: domain Description: GIIM Note: maturase Location: 2504500-250471 0 bp Feature: gene Location: 2505154-2505288 bp Feature: gene Location: 2505370-2507838 bp Ori: AHG64278.1 Gene: lon Feature: domain Description: PRK10787 Location: 2505400-2507737 bp Feature: domain Description: PRK1 0787 Location: 2505400-2507737 bp Feature: gene Location: 2806669-2807028 bp Ori: AHG64533.1 Gene: nuoA Feature: domain Description: PRK06602 Location: 2806675-2807026 bp Feature: domain Description: PRK06602 Location: 2806675-2807026 bp Feature: gene Location: 2807539-2808747 bp Ori: AHG64534.1 Feature: domain Description: gram_neg_porins Location: 2807605-2808745 bp Feature: domain Description: gram_neg_porins Location: 2807605-2808745 bp Feature: gene Location: 2809461-2810831 bp Ori: AHG64535.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2809794-2810412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2809794-281 041 2 bp Feature: domain Description: GIIM Note: maturase Location: 2810469-2810679 bp Feature: domain Description: GIIM Note: maturase Location: 281 0469-281 0679 bp Feature: gene Location: 2811123-2811239 bp Feature: gene Location: 2811326-2811784 bp Ori: AHG64537.1 Feature: domain Description: COG3241 Location: 2811347-2811782 bp Feature: domain Description: COG3241 Location: 281 1 347-281 1 782 bp Feature: gene Location: 3632329-3633276 bp Ori: AHG65252.1 Feature: domain Description: Aes Location: 3632386-3633253 bp Feature: domain Description: Aes Location: 3632386-3633253 bp Feature: gene Location: 3633623-3633958 bp Ori: AHG65253.1 Feature: domain Description: rve_3 Location: 3633737-3633932 bp Feature: domain Description: rve_3 Location: 3633737-3633932 bp Feature: gene Location: 3635303-3636472 bp Ori: AHG65254.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3635432-3635999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3635432-3635999 bp Feature: gene Location: 3636507-3636749 bp Feature: gene Location: 3637288-3640554 bp Ori: AHG65256.1 Feature: domain Description: DEXHc_RE Location: 3637702-3638206 bp Feature: domain Description: DEXHc_RE Location: 3637702-3638206 bp Feature: domain Description: HELICc Location: 3638350-3638692 bp Feature: domain Description: HELICc Location: 3638350-3638692 bp Feature: gene Location: 3715337-3716611 bp Ori: AHG65321.1 Feature: domain Description: PRK15182 Location: 3715349-3716609 bp Feature: domain Description: PRK1 51 82 Location: 371 5349-371 6609 bp Feature: gene Location: 3716752-3717825 bp Ori: AHG65322.1 Feature: domain Description: GT_MraY_like Location: 3716824-3717403 bp Feature: domain Description: GT_MraY_like Location: 371 6824-371 7403 bp Feature: gene Location: 3718301-3719671 bp Ori: AHG65323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3718634-3719252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 8634-371 9252 bp Feature: domain Description: GIIM Note: maturase Location: 3719309-3719519 bp Feature: domain Description: GIIM Note: maturase Location: 371 9309-371 951 9 bp Feature: gene Location: 3720731-3721408 bp Ori: AHG65324.1 Gene: coq7 Feature: domain Description: Coq7 Location: 3720788-3721406 bp Feature: domain Description: Coq7 Location: 3720788-3721 406 bp Feature: gene Location: 3721547-3721969 bp Ori: AHG65325.1 Feature: domain Description: PRK10738 Location: 3721550-3721964 bp Feature: domain Description: PRK1 0738 Location: 3721 550-3721 964 bp Feature: gene Location: 4667034-4668155 bp Ori: AHG66109.1 Feature: domain Description: GSDH Location: 4667148-4668138 bp Feature: domain Description: GSDH Location: 46671 48-46681 38 bp Feature: gene Location: 4668250-4669479 bp Ori: AHG66110.1 Gene: serA3 Feature: domain Description: PRK11790 Location: 4668253-4669477 bp Feature: domain Description: PRK1 1 790 Location: 4668253-4669477 bp Feature: gene Location: 4669718-4671088 bp Ori: AHG66111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670051-4670669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670051 -4670669 bp Feature: domain Description: GIIM Note: maturase Location: 4670726-4670936 bp Feature: domain Description: GIIM Note: maturase Location: 4670726-4670936 bp Feature: gene Location: 4671380-4671496 bp Feature: gene Location: 4671578-4675828 bp Ori: AHG66113.1 Gene: rpoC Feature: domain Description: PRK00566 Location: 4671617-4675733 bp Feature: domain Description: PRK00566 Location: 4671 61 7-4675733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CaiB (COG1804), CytC5 (COG3245), RVT-GII, VirB4_CagE (TIGR00929), COG4584 (Transposase ), S14_ClpP_1 (cd07016), GIIM (pfam08388), Phage_capsid (pfam05065), DUF3168 (pfam11367), Phage_TAC_13 (pfam16459)
COG5281 (Phage-related minor tail protein ), tape_meas_lam_C (TIGR01541), PRK10664 (DNA-binding protein HU-beta), MutK (COG2354), OmpA_C-like (cl30079), PRK10787 (DNA-binding ATP-dependent protease La; Provisional), PRK06602 (NADH:ubiquinone oxidoreductase subunit A; Validated), gram_neg_porins (cd00342), COG3241 (Azurin ), Aes (COG0657)
rve_3 (pfam13683), RVT-Retrons, DEXHc_RE (cd17926), HELICc (smart00490), PRK15182 (Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB), GT_MraY_like (cd06912), Coq7 (COG2941), PRK10738 (OsmC family protein), GSDH (pfam07995), PRK11790 (phosphoglycerate dehydrogenase)
PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional)