myRT

myRT report for GCA_000597865.1_ASM59786v1

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Seq: CP007453.1 Peptoclostridium acidaminophilum DSM 3953 plasmid EAL2_808p, complete sequence (808774 bp)
Overview 1 RT 1: 140012-148313 bp 2 RT 2: 262930-270106 bp 3 RT 3: 441580-451863 bp 4 RT 4: 522419-526714 bp Neighborhood of RT #1 [140012, 148327] PRK06526 COG0610 RVT-GII GIIM RVT-GII GIIM sigma70-ECF Neighborhood of RT #2 [262930, 270243] COG1661 Ldh_2 RVT-GII GIIM InsQ OPT Neighborhood of RT #3 [441580, 451886] Zn_dep_PLPC PRK13663 RVT-GII GIIM RVT-GII GIIM OAFO_sf InsQ Neighborhood of RT #4 [522419, 526714] InsQ Y1_Tnp RVT-GII GIIM Feature: gene Location: 140012-140755 bp Ori: AHM57646.1 Gene: istB Feature: domain Description: PRK06526 Location: 140042-140738 bp Feature: domain Description: PRK06526 Location: 1 40042-1 40738 bp Feature: gene Location: 141085-143577 bp Ori: AHM57647.1 Gene: hsdR2 Feature: domain Description: COG0610 Location: 141214-142396 bp Feature: domain Description: COG061 0 Location: 1 41 21 4-1 42396 bp Feature: gene Location: 144160-145557 bp Ori: AHM57648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144472-145096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44472-1 45096 bp Feature: domain Description: GIIM Note: maturase Location: 145153-145375 bp Feature: domain Description: GIIM Note: maturase Location: 1 451 53-1 45375 bp Feature: gene Location: 145598-145762 bp Feature: gene Location: 146105-147343 bp Ori: AHM57650.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-146966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46309-1 46966 bp Feature: domain Description: GIIM Note: maturase Location: 147047-147266 bp Feature: domain Description: GIIM Note: maturase Location: 1 47047-1 47266 bp Feature: gene Location: 147623-147739 bp Feature: gene Location: 147830-148327 bp Ori: AHM57652.1 Feature: domain Description: sigma70-ECF Location: 147962-148313 bp Feature: domain Description: sigma70-ECF Location: 1 47962-1 4831 3 bp Feature: gene Location: 262930-263373 bp Ori: AHM57777.1 Feature: domain Description: COG1661 Location: 262939-263362 bp Feature: domain Description: COG1 661 Location: 262939-263362 bp Feature: gene Location: 263643-264743 bp Ori: AHM57778.1 Gene: mdh Feature: domain Description: Ldh_2 Location: 263664-264678 bp Feature: domain Description: Ldh_2 Location: 263664-264678 bp Feature: gene Location: 265256-266560 bp Ori: AHM57779.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265568-266180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265568-2661 80 bp Feature: domain Description: GIIM Note: maturase Location: 266240-266456 bp Feature: domain Description: GIIM Note: maturase Location: 266240-266456 bp Feature: gene Location: 266731-267906 bp Ori: AHM57780.1 Feature: domain Description: InsQ Location: 266923-267847 bp Feature: domain Description: InsQ Location: 266923-267847 bp Feature: gene Location: 268312-270243 bp Ori: AHM57781.1 Feature: domain Description: OPT Location: 268426-270106 bp Feature: domain Description: OPT Location: 268426-2701 06 bp Feature: gene Location: 441580-442596 bp Ori: AHM57949.1 Feature: domain Description: Zn_dep_PLPC Location: 441598-442105 bp Feature: domain Description: Zn_dep_PLPC Location: 441 598-4421 05 bp Feature: gene Location: 442942-444450 bp Ori: AHM57950.1 Feature: domain Description: PRK13663 Location: 442945-444442 bp Feature: domain Description: PRK1 3663 Location: 442945-444442 bp Feature: gene Location: 444929-446326 bp Ori: AHM57951.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445241-445865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445241 -445865 bp Feature: domain Description: GIIM Note: maturase Location: 445922-446144 bp Feature: domain Description: GIIM Note: maturase Location: 445922-4461 44 bp Feature: gene Location: 446367-446531 bp Feature: gene Location: 446874-448112 bp Ori: AHM57953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447078-447735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447078-447735 bp Feature: domain Description: GIIM Note: maturase Location: 447816-448035 bp Feature: domain Description: GIIM Note: maturase Location: 44781 6-448035 bp Feature: gene Location: 448378-450069 bp Ori: AHM57954.1 Gene: korA Feature: domain Description: OAFO_sf Location: 448390-450040 bp Feature: domain Description: OAFO_sf Location: 448390-450040 bp Feature: gene Location: 450723-451886 bp Ori: AHM57955.1 Feature: domain Description: InsQ Location: 450729-451863 bp Feature: domain Description: InsQ Location: 450729-451 863 bp Feature: gene Location: 522419-523531 bp Ori: AHM58017.1 Feature: domain Description: InsQ Location: 522434-523520 bp Feature: domain Description: InsQ Location: 522434-523520 bp Feature: gene Location: 523555-523920 bp Ori: AHM58018.1 Feature: domain Description: Y1_Tnp Location: 523561-523909 bp Feature: domain Description: Y1 _Tnp Location: 523561 -523909 bp Feature: gene Location: 524167-524964 bp Ori: AHM58019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524170-524602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5241 70-524602 bp Feature: domain Description: GIIM Note: maturase Location: 524686-524902 bp Feature: domain Description: GIIM Note: maturase Location: 524686-524902 bp Feature: gene Location: 525438-525557 bp Feature: gene Location: 526061-526714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-GII, GIIM (pfam08388), sigma70-ECF (TIGR02937), COG1661 (Predicted DNA-binding protein with PD1-like DNA-binding motif ), Ldh_2 (pfam02615), InsQ (COG0675), OPT (pfam03169), Zn_dep_PLPC (smart00770)
PRK13663 (hypothetical protein; Provisional), OAFO_sf (TIGR03710), Y1_Tnp (pfam01797)

Seq: CP007452.1 Peptoclostridium acidaminophilum DSM 3953 chromosome, complete genome (2246262 bp)
Overview 1 RT 1: 293844-298049 bp 2 RT 2: 800788-809606 bp 3 RT 3: 1796807-1804473 bp Neighborhood of RT #1 [293844, 298159] PRK09183 rve RVT-GII Polbeta Neighborhood of RT #2 [800788, 809611] OAH_OAS_sulfhy Ppnp RVT-GII GIIM RVT-GII GIIM HATPase_c_3 PRK10720 Neighborhood of RT #3 [1796807, 1804493] YdjM PRK05764 RVT-GII GIIM RVT-GII GIIM lysS Feature: gene Location: 293844-294629 bp Ori: AHM55634.1 Gene: istB1 Feature: domain Description: PRK09183 Location: 293880-294600 bp Feature: domain Description: PRK09183 Location: 2 93880-2 94600 bp Feature: gene Location: 294626-295549 bp Ori: AHM55635.1 Feature: domain Description: rve Location: 294638-294806 bp Feature: domain Description: rve Location: 2 94638-2 94806 bp Feature: gene Location: 296097-297035 bp Ori: AHM55636.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296352-296976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 96352 -2 96976 bp Feature: gene Location: 297158-297424 bp Feature: gene Location: 297686-298159 bp Ori: AHM55638.1 Feature: domain Description: Polbeta Location: 297779-298049 bp Feature: domain Description: Polbeta Location: 2 97779-2 98049 bp Feature: gene Location: 800788-802053 bp Ori: AHM56101.1 Gene: mdeA1 Feature: domain Description: OAH_OAS_sulfhy Location: 800797-802045 bp Feature: domain Description: OAH_OAS_sulfhy Location: 800797-802 045 bp Feature: gene Location: 802093-802404 bp Ori: AHM56102.1 Feature: domain Description: Ppnp Location: 802126-802399 bp Feature: domain Description: Ppnp Location: 802 12 6-802 399 bp Feature: gene Location: 802931-804328 bp Ori: AHM56103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803243-803867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8032 43-803867 bp Feature: domain Description: GIIM Note: maturase Location: 803924-804146 bp Feature: domain Description: GIIM Note: maturase Location: 80392 4-804146 bp Feature: gene Location: 804369-804533 bp Feature: gene Location: 804876-806114 bp Ori: AHM56105.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805080-805737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805080-805737 bp Feature: domain Description: GIIM Note: maturase Location: 805818-806037 bp Feature: domain Description: GIIM Note: maturase Location: 805818-806037 bp Feature: gene Location: 806353-808254 bp Ori: AHM56106.1 Feature: domain Description: HATPase_c_3 Location: 806422-806701 bp Feature: domain Description: HATPase_c_3 Location: 80642 2 -806701 bp Feature: gene Location: 808343-809611 bp Ori: AHM56107.1 Gene: uraA Feature: domain Description: PRK10720 Location: 808352-809606 bp Feature: domain Description: PRK1072 0 Location: 808352 -809606 bp Feature: gene Location: 1796807-1797397 bp Ori: AHM57075.1 Feature: domain Description: YdjM Location: 1796810-1797383 bp Feature: domain Description: YdjM Location: 1796810-1797383 bp Feature: gene Location: 1797647-1798825 bp Ori: AHM57076.1 Gene: aspC Feature: domain Description: PRK05764 Location: 1797653-1798820 bp Feature: domain Description: PRK05764 Location: 1797653-179882 0 bp Feature: gene Location: 1798960-1800198 bp Ori: AHM57077.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1799164-1799821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1799164-179982 1 bp Feature: domain Description: GIIM Note: maturase Location: 1799902-1800121 bp Feature: domain Description: GIIM Note: maturase Location: 1799902 -180012 1 bp Feature: gene Location: 1800541-1800705 bp Feature: gene Location: 1800746-1802101 bp Ori: AHM57079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801016-1801640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801016-1801640 bp Feature: domain Description: GIIM Note: maturase Location: 1801697-1801919 bp Feature: domain Description: GIIM Note: maturase Location: 1801697-1801919 bp Feature: gene Location: 1802581-1802778 bp Feature: gene Location: 1803009-1804493 bp Ori: AHM57081.1 Gene: lysS Feature: domain Description: lysS Location: 1803030-1804473 bp Feature: domain Description: lysS Location: 1803030-1804473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), rve (pfam00665), RVT-GII, Polbeta (pfam18765), OAH_OAS_sulfhy (TIGR01326), Ppnp, GIIM (pfam08388), HATPase_c_3 (pfam13589), PRK10720 (uracil transporter; Provisional), YdjM (pfam04307)
PRK05764 (aspartate aminotransferase; Provisional), lysS (PRK02983)