myRT

myRT report for GCA_000626635.1_ASM62663v1

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Seq: CP007451.1 Draconibacterium orientale strain FH5T, complete genome (5132075 bp)
Overview 1 RT 1: 272299-282576 bp 2 RT 2: 638952-645965 bp 3 RT 3: 789931-796462 bp 4 RT 4: 1222101-1227610 bp 5 RT 5: 1523453-1529507 bp 6 RT 6: 1629556-1635010 bp 7 RT 7: 2564445-2573233 bp 8 RT 8: 3206358-3215998 bp 9 RT 9: 3462806-3467931 bp 10 RT 10: 4486436-4493677 bp Neighborhood of RT #1 [272299, 282581] FtcD FTCD_C PRK09356 RVT-GII GIIM PRK14185 Tex Neighborhood of RT #2 [638952, 645997] COG4585 CitB RVT-GII GIIM OmpA TrmA Neighborhood of RT #3 [789931, 796464] OMP_RagA_SusC BtuE RVT-GII GIIM folC YlaK Neighborhood of RT #4 [1222101, 1227618] KOG1307 KOG1307 TatA RVT-GII GIIM tsf rpsB Neighborhood of RT #5 [1523453, 1529557] hyd_TM1266 TonB-hemin RVT-GII COG4584 IstB_IS21 Neighborhood of RT #6 [1629556, 1635015] MATE_Wzx_like DUF3267 RVT-GII GIIM frr AAK_UMPK-PyrH-Ec Neighborhood of RT #7 [2564445, 2573256] PRK13024 RVT-GII GIIM PRC PRC TonB_C Neighborhood of RT #8 [3206358, 3216006] PRK09282 OAD_beta RVT-GII GIIM sensory_box sensory_box sensory_box sensory_box sensory_box PAS_8 PRK11091 sensory_box TMAO_torS Neighborhood of RT #9 [3462806, 3467978] SnoaL_3 RVT-GII GIIM COG3666 DDE_Tnp_1_6 DUF3276 Neighborhood of RT #10 [4486436, 4493976] VirE_N PriCT_2 DUF3987 RVT-UG2 HTH_XRE DEXDc_RapA PRK04914 Feature: gene Location: 272299-273996 bp Ori: AHW58646.1 Feature: domain Description: FtcD Location: 272302-273352 bp Feature: domain Description: FtcD Location: 272302-273352 bp Feature: domain Description: FTCD_C Location: 273385-273925 bp Feature: domain Description: FTCD_C Location: 273385-273925 bp Feature: gene Location: 274408-275661 bp Ori: AHW58647.1 Feature: domain Description: PRK09356 Location: 274414-275650 bp Feature: domain Description: PRK09356 Location: 27441 4-275650 bp Feature: gene Location: 276048-277466 bp Ori: AHW58648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276390-277008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276390-277008 bp Feature: domain Description: GIIM Note: maturase Location: 277074-277290 bp Feature: domain Description: GIIM Note: maturase Location: 277074-277290 bp Feature: gene Location: 277929-278804 bp Ori: AHW58649.1 Feature: domain Description: PRK14185 Location: 277932-278802 bp Feature: domain Description: PRK1 41 85 Location: 277932-278802 bp Feature: gene Location: 280446-282581 bp Ori: AHW58650.1 Feature: domain Description: Tex Location: 280449-282576 bp Feature: domain Description: Tex Location: 280449-282576 bp Feature: gene Location: 638952-640190 bp Ori: AHW61492.1 Feature: domain Description: COG4585 Location: 639552-640182 bp Feature: domain Description: COG4585 Location: 639552-6401 82 bp Feature: gene Location: 640200-640853 bp Ori: AHW58836.1 Feature: domain Description: CitB Location: 640215-640845 bp Feature: domain Description: CitB Location: 64021 5-640845 bp Feature: gene Location: 640999-642417 bp Ori: AHW58837.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641341-641959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 641 341 -641 959 bp Feature: domain Description: GIIM Note: maturase Location: 642025-642241 bp Feature: domain Description: GIIM Note: maturase Location: 642025-642241 bp Feature: gene Location: 642891-644396 bp Ori: AHW61493.1 Feature: domain Description: OmpA Location: 644028-644379 bp Feature: domain Description: OmpA Location: 644028-644379 bp Feature: gene Location: 644582-645997 bp Ori: AHW58838.1 Feature: domain Description: TrmA Location: 644621-645965 bp Feature: domain Description: TrmA Location: 644621 -645965 bp Feature: gene Location: 789931-790542 bp Ori: AHW61518.1 Feature: domain Description: OMP_RagA_SusC Location: 790006-790249 bp Feature: domain Description: OMP_RagA_SusC Location: 790006-790249 bp Feature: gene Location: 790651-791187 bp Ori: AHW58928.1 Feature: domain Description: BtuE Location: 790714-791164 bp Feature: domain Description: BtuE Location: 79071 4-791 1 64 bp Feature: gene Location: 791306-792724 bp Ori: AHW58929.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791648-792266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 648-792266 bp Feature: domain Description: GIIM Note: maturase Location: 792332-792548 bp Feature: domain Description: GIIM Note: maturase Location: 792332-792548 bp Feature: gene Location: 793643-794938 bp Ori: AHW58930.1 Feature: domain Description: folC Location: 793730-794936 bp Feature: domain Description: folC Location: 793730-794936 bp Feature: gene Location: 795136-796464 bp Ori: AHW58931.1 Feature: domain Description: YlaK Location: 795157-796462 bp Feature: domain Description: YlaK Location: 7951 57-796462 bp Feature: gene Location: 1222101-1223129 bp Ori: AHW59158.1 Feature: domain Description: KOG1307 Location: 1222107-1222548 bp Feature: domain Description: KOG1 307 Location: 1 2221 07-1 222548 bp Feature: domain Description: KOG1307 Location: 1222671-1223112 bp Feature: domain Description: KOG1 307 Location: 1 222671 -1 2231 1 2 bp Feature: gene Location: 1223147-1223413 bp Ori: AHW59159.1 Feature: domain Description: TatA Location: 1223168-1223381 bp Feature: domain Description: TatA Location: 1 2231 68-1 223381 bp Feature: gene Location: 1224094-1225512 bp Ori: AHW59160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1224436-1225054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 224436-1 225054 bp Feature: domain Description: GIIM Note: maturase Location: 1225120-1225336 bp Feature: domain Description: GIIM Note: maturase Location: 1 2251 20-1 225336 bp Feature: gene Location: 1225981-1226805 bp Ori: AHW59161.1 Feature: domain Description: tsf Location: 1225984-1226800 bp Feature: domain Description: tsf Location: 1 225984-1 226800 bp Feature: gene Location: 1226851-1227618 bp Ori: AHW59162.1 Feature: domain Description: rpsB Location: 1226854-1227610 bp Feature: domain Description: rpsB Location: 1 226854-1 22761 0 bp Feature: gene Location: 1523453-1523707 bp Ori: AHW59347.1 Feature: domain Description: hyd_TM1266 Location: 1523465-1523684 bp Feature: domain Description: hyd_TM1 266 Location: 1 523465-1 523684 bp Feature: gene Location: 1523700-1525916 bp Ori: AHW61682.1 Feature: domain Description: TonB-hemin Location: 1523832-1525914 bp Feature: domain Description: TonB-hemin Location: 1 523832-1 52591 4 bp Feature: gene Location: 1526491-1527084 bp Ori: AHW59348.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526833-1527064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 526833-1 527064 bp Feature: gene Location: 1527257-1528804 bp Ori: AHW59349.1 Feature: domain Description: COG4584 Location: 1527527-1528169 bp Feature: domain Description: COG4584 Location: 1 527527-1 5281 69 bp Feature: gene Location: 1528820-1529557 bp Ori: AHW59350.1 Feature: domain Description: IstB_IS21 Location: 1528976-1529507 bp Feature: domain Description: IstB_IS21 Location: 1 528976-1 529507 bp Feature: gene Location: 1629556-1631004 bp Ori: AHW61698.1 Feature: domain Description: MATE_Wzx_like Location: 1629649-1630768 bp Feature: domain Description: MATE_Wzx_like Location: 1 629649-1 630768 bp Feature: gene Location: 1630991-1631626 bp Ori: AHW61699.1 Feature: domain Description: DUF3267 Location: 1631258-1631558 bp Feature: domain Description: DUF3267 Location: 1 631 258-1 631 558 bp Feature: gene Location: 1631733-1633139 bp Ori: AHW59404.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1632075-1632693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 632075-1 632693 bp Feature: domain Description: GIIM Note: maturase Location: 1632744-1632963 bp Feature: domain Description: GIIM Note: maturase Location: 1 632744-1 632963 bp Feature: gene Location: 1633634-1634197 bp Ori: AHW59405.1 Feature: domain Description: frr Location: 1633652-1634195 bp Feature: domain Description: frr Location: 1 633652-1 6341 95 bp Feature: gene Location: 1634305-1635015 bp Ori: AHW59406.1 Gene: pyrH Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 1634320-1635010 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 1 634320-1 63501 0 bp Feature: gene Location: 2564445-2564846 bp Feature: gene Location: 2564954-2567953 bp Ori: AHW59920.1 Feature: domain Description: PRK13024 Location: 2564957-2567948 bp Feature: domain Description: PRK1 3024 Location: 2564957-2567948 bp Feature: gene Location: 2568455-2569873 bp Ori: AHW59921.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2568797-2569415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2568797-256941 5 bp Feature: domain Description: GIIM Note: maturase Location: 2569481-2569697 bp Feature: domain Description: GIIM Note: maturase Location: 2569481 -2569697 bp Feature: gene Location: 2571254-2572048 bp Ori: AHW59922.1 Feature: domain Description: PRC Location: 2571314-2571536 bp Feature: domain Description: PRC Location: 2571 31 4-2571 536 bp Feature: domain Description: PRC Location: 2571767-2571956 bp Feature: domain Description: PRC Location: 2571 767-2571 956 bp Feature: gene Location: 2572558-2573256 bp Ori: AHW61906.1 Feature: domain Description: TonB_C Location: 2572978-2573233 bp Feature: domain Description: TonB_C Location: 2572978-2573233 bp Feature: gene Location: 3206358-3208235 bp Ori: AHW60304.1 Feature: domain Description: PRK09282 Location: 3206598-3208230 bp Feature: domain Description: PRK09282 Location: 3206598-3208230 bp Feature: gene Location: 3208245-3209450 bp Ori: AHW60305.1 Feature: domain Description: OAD_beta Location: 3208305-3209442 bp Feature: domain Description: OAD_beta Location: 3208305-3209442 bp Feature: gene Location: 3209916-3211334 bp Ori: AHW60306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3210258-3210876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 0258-321 0876 bp Feature: domain Description: GIIM Note: maturase Location: 3210942-3211158 bp Feature: domain Description: GIIM Note: maturase Location: 321 0942-321 1 1 58 bp Feature: gene Location: 3211688-3213160 bp Ori: AHW62026.1 Feature: domain Description: sensory_box Location: 3211823-3212177 bp Feature: domain Description: sensory_box Location: 321 1 823-321 21 77 bp Feature: domain Description: sensory_box Location: 3212351-3212570 bp Feature: domain Description: sensory_box Location: 321 2351 -321 2570 bp Feature: domain Description: sensory_box Location: 3212579-3212942 bp Feature: domain Description: sensory_box Location: 321 2579-321 2942 bp Feature: domain Description: sensory_box Location: 3212957-3213071 bp Feature: domain Description: sensory_box Location: 321 2957-321 3071 bp Feature: gene Location: 3213217-3216006 bp Ori: AHW60307.1 Feature: domain Description: sensory_box Location: 3213328-3213694 bp Feature: domain Description: sensory_box Location: 321 3328-321 3694 bp Feature: domain Description: PAS_8 Location: 3213709-3213865 bp Feature: domain Description: PAS_8 Location: 321 3709-321 3865 bp Feature: domain Description: PRK11091 Location: 3213883-3214447 bp Feature: domain Description: PRK1 1 091 Location: 321 3883-321 4447 bp Feature: domain Description: sensory_box Location: 3214468-3214825 bp Feature: domain Description: sensory_box Location: 321 4468-321 4825 bp Feature: domain Description: TMAO_torS Location: 3214831-3215998 bp Feature: domain Description: TMAO_torS Location: 321 4831 -321 5998 bp Feature: gene Location: 3462806-3463141 bp Feature: gene Location: 3463322-3463696 bp Ori: AHW62080.1 Feature: domain Description: SnoaL_3 Location: 3463433-3463661 bp Feature: domain Description: SnoaL_3 Location: 3463433-3463661 bp Feature: gene Location: 3464170-3465576 bp Ori: AHW60457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3464512-3465130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346451 2-34651 30 bp Feature: domain Description: GIIM Note: maturase Location: 3465184-3465400 bp Feature: domain Description: GIIM Note: maturase Location: 34651 84-3465400 bp Feature: gene Location: 3465669-3467339 bp Ori: AHW60458.1 Feature: domain Description: COG3666 Location: 3465726-3466167 bp Feature: domain Description: COG3666 Location: 3465726-34661 67 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3466818-3467190 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 346681 8-34671 90 bp Feature: gene Location: 3467586-3467978 bp Ori: AHW60459.1 Feature: domain Description: DUF3276 Location: 3467628-3467931 bp Feature: domain Description: DUF3276 Location: 3467628-3467931 bp Feature: gene Location: 4486436-4487392 bp Ori: AHW61040.1 Feature: domain Description: VirE_N Location: 4486997-4487342 bp Feature: domain Description: VirE_N Location: 4486997-4487342 bp Feature: gene Location: 4487534-4489366 bp Ori: AHW61041.1 Feature: domain Description: PriCT_2 Location: 4487705-4487921 bp Feature: domain Description: PriCT_2 Location: 4487705-4487921 bp Feature: domain Description: DUF3987 Location: 4488155-4489172 bp Feature: domain Description: DUF3987 Location: 44881 55-44891 72 bp Feature: gene Location: 4489750-4491351 bp Ori: AHW61042.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4490059-4491004 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4490059-4491 004 bp Feature: gene Location: 4491590-4491874 bp Ori: AHW61043.1 Feature: domain Description: HTH_XRE Location: 4491602-4491773 bp Feature: domain Description: HTH_XRE Location: 4491 602-4491 773 bp Feature: gene Location: 4491886-4493976 bp Ori: AHW62294.1 Feature: domain Description: DEXDc_RapA Location: 4492171-4492759 bp Feature: domain Description: DEXDc_RapA Location: 44921 71 -4492759 bp Feature: domain Description: PRK04914 Location: 4493320-4493677 bp Feature: domain Description: PRK0491 4 Location: 4493320-4493677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtcD (TIGR02024), FTCD_C (pfam04961), PRK09356 (imidazolonepropionase; Validated), RVT-GII, GIIM (pfam08388), PRK14185 (bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD), Tex (COG2183), COG4585 (Signal transduction histidine kinase ), CitB (TIGR02484), OmpA (pfam00691)
TrmA (COG2265), OMP_RagA_SusC (TIGR04056), BtuE (COG0386), folC (TIGR01499), YlaK (COG1875), KOG1307 (KOG1307, K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins ), TatA (COG1826), tsf (TIGR00116), rpsB (PRK12311), hyd_TM1266 (TIGR03959)
TonB-hemin (TIGR01785), COG4584 (Transposase ), IstB_IS21 (pfam01695), MATE_Wzx_like (cd13128), DUF3267 (pfam11667), frr (TIGR00496), AAK_UMPK-PyrH-Ec (cd04254), PRK13024 (bifunctional preprotein translocase subunit SecD/SecF; Reviewed), PRC (pfam05239), TonB_C (pfam03544)
PRK09282 (pyruvate carboxylase subunit B; Validated), OAD_beta (pfam03977), sensory_box (TIGR00229), PAS_8 (pfam13188), PRK11091 (aerobic respiration control sensor protein ArcB; Provisional), TMAO_torS (TIGR02956), SnoaL_3 (pfam13474), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), DUF3276 (pfam11680)
VirE_N (pfam08800), PriCT_2 (pfam08707), DUF3987 (pfam13148), RVT-UG2, HTH_XRE (smart00530), DEXDc_RapA (cd18011), PRK04914 (RNA polymerase-associated protein RapA)