myRT report for GCA_000648735.3_ASM64873v3
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Seq: CP011972.2 Pseudomonas syringae pv. actinidiae ICMP 18884, complete genome (6555569 bp)
Associated domains:myRT
| UvrD_C (pfam13361) | , RVT-UG9 | , HTH_28 (pfam13518) | , DDE_3 (pfam13358) | , upstrm_HI1419 (TIGR02683) | , HTH_Tnp_1 (pfam01527) | , Tra5 (COG2801) | , RVT-Retrons | , ComA-like_MBL-fold (cd07731) | , PRK10756 (protein CreA) |
TnpB_IS66 (pfam05717), RVT-GII | , GIIM (pfam08388) | , LZ_Tnp_IS66 (pfam13007) | , zf-IS66 (pfam13005) | , DDE_Tnp_IS66 (pfam03050) | , DDE_Tnp_IS66_C (pfam13817) | , CbiG (COG2073) | , CobJ (COG1010) | , MltB (TIGR02282) |
PG_binding_1 (pfam01471), ArfA (COG3036) | , IS285 (COG3328) | , holA (TIGR01128) | , T5orf172 (smart00974) | , Glyco_tranf_2_4 (pfam13704) | , PagL (pfam09411) | , COG3666 (Transposase ) | , DDE_Tnp_1 (pfam01609) | , YkgJ (COG0727) |
DUF2878 (pfam11086), HTH_MlrA-CarA (cd01104) | , YbbK (COG1683) | , YbgA (COG3272) | , TIGR02450 (tryptophan-rich conserved hypothetical protein) | , COG3380 (Predicted NAD/FAD-dependent oxidoreductase ) | , PRK05693 (SDR family oxidoreductase) | , LbH_gamma_CA_like (cd04645) | , YdhL (COG3313) | , YhhQ (COG1738) |
BtuE (COG0386), Toluene_X (pfam03349) | , Hpt (pfam01627) | , FliK (COG3144) | , fliL (PRK12785) | , PRK12467 (peptide synthase; Provisional) | , A_NRPS (cd05930) | , FhuE (COG4773) | , PRK10378 (inactive ferrous ion transporter periplasmic protein EfeO; Provisional) | , tat_substr_1 (TIGR01412) |
type_I_sec_TolC (TIGR01844), solA (PRK11259) | , ALDH_KGSADH (cd07129) | , LysR (COG0583) | , YdhU (COG4117) | , TAT_signal (pfam10518) | , bact_SO_family_Moco (cd02108) | , PRK09257 (aromatic amino acid transaminase) | , PRK05298 (excinuclease ABC subunit UvrB) | , gltX (PRK14895) |
FadM (COG0824), PRK10550 (tRNA dihydrouridine(16) synthase DusC) | , NERD (pfam08378) | , DEXXQc_Upf1-like (cd17934) | , TauA (COG4521) | , PRK07044 (aldolase II superfamily protein; Provisional) | , DUF1206 (pfam06724) | , CHASE3 (pfam05227) | , Tar (COG0840) | , DDE_Tnp_1_6 (pfam13751) |
GatA (COG0154), GltB3 (COG0070) | , GltS_FMN (cd02808) | , SsuD (COG2141) | , GT_2_like_f (cd04182) | , RutF (TIGR03615) | , PRK13968 (putative succinate semialdehyde dehydrogenase; Provisional) | , GAF_2 (pfam13185) | , PRK10060 (cyclic di-GMP phosphodiesterase) | , PRK15441 (peptidyl-prolyl cis-trans isomerase C; Provisional) |
PilU (COG5008), COG4544 (Uncharacterized conserved protein ) | , PRK12423 (LexA repressor; Provisional) | , Tas (COG0667) | , HisM (COG0765) | , PBP2_Mlr3796_like (cd13695) | , Hemerythrin (TIGR00058) | , CysI (TIGR02041) | , COG3749 (Uncharacterized conserved protein, DUF934 family ) | , PRK11778 (putative inner membrane peptidase; Provisional) |
PhoE (COG0406), FGGY_D-XK_1 (cd07809) | , bac_FRK (cd01167) | , PGM_like3 (cd05801) | , DinG (COG1199) | , dinG (PRK11747) | , rad3 (TIGR00604) | , OprD (pfam03573) | , PRK11551 (putative 3-hydroxyphenylpropionic transporter MhpT; Provisional) | , SphA (COG4313) |
PRK12428 (coniferyl-alcohol dehydrogenase), modC_ABC (TIGR02142) | , Top1 (COG3569) | , Intron_maturas2 (pfam01348) | , HNHc (smart00507) | , DUF2625 (pfam10946) | , AtoC (COG2204) | , ligand_gated_channel (cd01347) | , ExbD (pfam02472) | , NUC1 (COG1864) |
PBP1_rhizopine_binding_like, Acetyltransf_10 (pfam13673) | , Acetyltransf_18 (pfam18014) | , ALDH_CddD_SSP0762 (cd07138) | , PRK10260 (L,D-transpeptidase; Provisional) | , COG3748 (Uncharacterized membrane protein ) | , Tsx (COG3248) | , MutK (COG2354) | , PRK11169 (leucine-responsive transcriptional regulator Lrp) | , PRK10791 (peptidylprolyl isomerase B) |
lipid_A_lpxH (TIGR01854), efflux_EmrB (TIGR00711) | , PRK15136 (multidrug efflux MFS transporter periplasmic adaptor subunit EmrA) | , FadB (TIGR02437) | , RdgC (pfam04381) | , YfeH (COG0385) | , PRK06814 (acyl---phospholipid O-acyltransferase) | , PRK04914 (RNA polymerase-associated protein RapA) | , DUF2177 (pfam09945) | , CvfB (COG2996) |
MFS_spinster_like (cd17328), MHYT (pfam03707) | , COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ) | , COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ) | , DsbA_FrnE (cd03024) | , PRK06102 (amidase) | , GntR (pfam00392) | , TrHb1_N (cd00454) | , DUF3034 (pfam11231) | , RfbB (COG1088) |
pgi (PRK14097), COG3662 (Uncharacterized conserved protein, DUF2236 family ) | , PRK05656 (acetyl-CoA C-acetyltransferase) | , PRK10712 (PTS system fructose-specific transporter subunits IIBC; Provisional) | , PTS_IIB_fructose (cd05569) | , PTS_IIC_fructo (TIGR01427) | , OafA (COG1835) | , Bfr (COG2193) | , PRK05321 (nicotinate phosphoribosyltransferase; Provisional) | , nadE (TIGR00552) |
COG3241 (Azurin ), YebA (COG1305) | , DUF2269 (pfam10027) | , RlmJ (COG2961) | , GAF (smart00065) | , PAS (smart00091) | , PRK00058 (peptide-methionine (S)-S-oxide reductase MsrA) | , PRK12483 (threonine dehydratase; Reviewed) | , PRK00702 (ribose-5-phosphate isomerase RpiA) | , PAAR_motif (pfam05488) |
VgrG (COG3501), DUF2345 (pfam10106) |
