myRT

myRT report for GCA_000698865.1_ASM69886v1

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Seq: CP008696.1 Pseudomonas chlororaphis strain PA23, complete genome (7122173 bp)
Overview 1 RT 1: 3830288-3834106 bp 2 RT 2: 5299714-5307413 bp 3 RT 3: 6032264-6035926 bp Neighborhood of RT #1 [3830288, 3834106] DUF1566 Avd_like RVT-DGRs Dcm Neighborhood of RT #2 [5299714, 5307436] conj_TOL_TraD conj_conj_conj_TIGR03747 RVT_N RVT-GII GIIM McrA OEP OEP Neighborhood of RT #3 [6032264, 6035943] RVT-GII GIIM YjiK Feature: gene Location: 3830288-3830860 bp Ori: AIC20622.1 Feature: domain Description: DUF1566 Location: 3830618-3830846 bp Feature: domain Description: DUF1 566 Location: 383061 8-3830846 bp Feature: gene Location: 3830916-3831275 bp Ori: AIC20623.1 Feature: domain Description: Avd_like Location: 3830943-3831249 bp Feature: domain Description: Avd_like Location: 3830943-3831 249 bp Feature: gene Location: 3831488-3832645 bp Ori: AIC20624.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3831737-3832493 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3831 737-3832493 bp Feature: gene Location: 3832686-3833879 bp Ori: AIC20625.1 Feature: domain Description: Dcm Location: 3832692-3833874 bp Feature: domain Description: Dcm Location: 3832692-3833874 bp Feature: gene Location: 3833876-3834106 bp Feature: gene Location: 5299714-5301942 bp Ori: AIC21857.1 Feature: domain Description: conj_TOL_TraD Location: 5299735-5301760 bp Feature: domain Description: conj_TOL_TraD Location: 5299735-5301 760 bp Feature: gene Location: 5301967-5302719 bp Ori: AIC21858.1 Feature: domain Description: conj_conj_conj_TIGR03747 Location: 5302021-5302717 bp Feature: domain Description: conj_conj_conj_TIGR03747 Location: 5302021 -530271 7 bp Feature: gene Location: 5303398-5305107 bp Ori: AIC21859.1 Feature: domain Description: RVT_N Location: 5303455-5303698 bp Feature: domain Description: RVT_N Location: 5303455-5303698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5303743-5304376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5303743-5304376 bp Feature: domain Description: GIIM Note: maturase Location: 5304433-5304664 bp Feature: domain Description: GIIM Note: maturase Location: 5304433-5304664 bp Feature: domain Description: McrA Location: 5304769-5305057 bp Feature: domain Description: McrA Location: 5304769-5305057 bp Feature: gene Location: 5305740-5306081 bp Feature: gene Location: 5306180-5307436 bp Ori: AIC21861.1 Feature: domain Description: OEP Location: 5306276-5306831 bp Feature: domain Description: OEP Location: 5306276-5306831 bp Feature: domain Description: OEP Location: 5306906-5307413 bp Feature: domain Description: OEP Location: 5306906-530741 3 bp Feature: gene Location: 6032264-6032914 bp Ori: AIC22526.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6032324-6032510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6032324-603251 0 bp Feature: domain Description: GIIM Note: maturase Location: 6032561-6032693 bp Feature: domain Description: GIIM Note: maturase Location: 6032561 -6032693 bp Feature: gene Location: 6034034-6034396 bp Feature: gene Location: 6035026-6035943 bp Ori: AIC22528.1 Feature: domain Description: YjiK Location: 6035050-6035926 bp Feature: domain Description: YjiK Location: 6035050-6035926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270), conj_TOL_TraD (TIGR03754), conj_conj_conj_TIGR03747, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)
OEP (pfam02321), YjiK (COG3204)