myRT

myRT report for GCA_000702925.2_ASM70292v2

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Seq: CP033381.1 Methylomonas sp. LW13 chromosome, complete genome (5233523 bp)
Overview 1 RT 1: 665258-679977 bp 2 RT 2: 2494103-2500986 bp 3 RT 3: 4145412-4147825 bp Neighborhood of RT #1 [665258, 679977] RVT-GII GIIM Transglut_core COG1470 COG1470 F5_F8_type_C ISOPREN_C2_like SQCY COG1470 COG1470 REJ REJ Neighborhood of RT #2 [2494103, 2501000] recD ABC_ATPase RVT-Retrons tolC Neighborhood of RT #3 [4145412, 4147825] DDE_Tnp_IS1595 RVT-GII GIIM Feature: gene Location: 665258-665884 bp Feature: gene Location: 666114-667388 bp Feature: gene Location: 668045-669439 bp Ori: QBC25974.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668399-669062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668399-669062 bp Feature: domain Description: GIIM Note: maturase Location: 669134-669350 bp Feature: domain Description: GIIM Note: maturase Location: 6691 34-669350 bp Feature: gene Location: 669852-679163 bp Ori: QBC25975.1 Feature: domain Description: Transglut_core Location: 670161-670539 bp Feature: domain Description: Transglut_core Location: 6701 61 -670539 bp Feature: domain Description: COG1470 Location: 672324-672912 bp Feature: domain Description: COG1 470 Location: 672324-67291 2 bp Feature: domain Description: COG1470 Location: 673257-673506 bp Feature: domain Description: COG1 470 Location: 673257-673506 bp Feature: domain Description: F5_F8_type_C Location: 674061-674388 bp Feature: domain Description: F5_F8_type_C Location: 674061 -674388 bp Feature: domain Description: ISOPREN_C2_like Location: 674937-675309 bp Feature: domain Description: ISOPREN_C2_like Location: 674937-675309 bp Feature: domain Description: SQCY Location: 675990-676248 bp Feature: domain Description: SQCY Location: 675990-676248 bp Feature: domain Description: COG1470 Location: 676644-676944 bp Feature: domain Description: COG1 470 Location: 676644-676944 bp Feature: domain Description: COG1470 Location: 677001-677259 bp Feature: domain Description: COG1 470 Location: 677001 -677259 bp Feature: domain Description: REJ Location: 677859-678108 bp Feature: domain Description: REJ Location: 677859-6781 08 bp Feature: domain Description: REJ Location: 678393-678708 bp Feature: domain Description: REJ Location: 678393-678708 bp Feature: gene Location: 679318-679977 bp Feature: gene Location: 2494103-2496076 bp Ori: QBC27430.1 Gene: recD Feature: domain Description: recD Location: 2494139-2496059 bp Feature: domain Description: recD Location: 24941 39-2496059 bp Feature: gene Location: 2496258-2497631 bp Ori: QBC27431.1 Feature: domain Description: ABC_ATPase Location: 2496333-2497023 bp Feature: domain Description: ABC_ATPase Location: 2496333-2497023 bp Feature: gene Location: 2497634-2498602 bp Ori: QBC27432.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2497784-2498330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2497784-2498330 bp Feature: gene Location: 2499016-2499207 bp Feature: gene Location: 2499681-2501000 bp Ori: QBC27434.1 Feature: domain Description: tolC Location: 2499729-2500986 bp Feature: domain Description: tolC Location: 2499729-2500986 bp Feature: gene Location: 4145412-4145596 bp Feature: gene Location: 4145674-4145895 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 4145680-4145794 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 41 45680-41 45794 bp Feature: gene Location: 4146146-4147297 bp Ori: QBC28781.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4146248-4146872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 46248-41 46872 bp Feature: domain Description: GIIM Note: maturase Location: 4146920-4147148 bp Feature: domain Description: GIIM Note: maturase Location: 41 46920-41 471 48 bp Feature: gene Location: 4147273-4147452 bp Feature: gene Location: 4147505-4147825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Transglut_core (pfam01841), COG1470 (Uncharacterized membrane protein ), F5_F8_type_C (pfam00754), ISOPREN_C2_like (cl08267), SQCY (cd02889), REJ (pfam02010), recD (TIGR01447), ABC_ATPase (pfam09818)
RVT-Retrons, tolC (PRK09465), DDE_Tnp_IS1595 (pfam12762)