myRT

myRT report for GCA_000710365.3_ASM71036v3

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Seq: CP036546.1 Bacteroides fragilis strain DCMSKEJBY0001B chromosome, complete genome (5325251 bp)
Overview 1 RT 1: 260153-263171 bp 2 RT 2: 801945-806440 bp 3 RT 3: 1497873-1502362 bp 4 RT 4: 1509223-1516153 bp 5 RT 5: 2185255-2194159 bp 6 RT 6: 2503265-2506349 bp 7 RT 7: 3718141-3721928 bp Neighborhood of RT #1 [260153, 263215] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Neighborhood of RT #2 [801945, 806469] DUF3876 DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Neighborhood of RT #3 [1497873, 1502397] Bac_Flav_CT_J RVT-GII matK HNHc DUF4141 DUF3876 Neighborhood of RT #4 [1509223, 1518291] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C KAP_NTPase Neighborhood of RT #5 [2185255, 2194167] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #6 [2503265, 2506363] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Neighborhood of RT #7 [3718141, 3722074] RVT-GII KOG1378 Feature: gene Location: 260153-260371 bp Ori: QCQ43572.1 Feature: domain Description: DUF4134 Location: 260174-260357 bp Feature: domain Description: DUF41 34 Location: 2601 74-260357 bp Feature: gene Location: 260392-260691 bp Feature: gene Location: 260987-262642 bp Ori: QCQ43574.1 Gene: ltrA Feature: domain Description: RVT_N Location: 261044-261281 bp Feature: domain Description: RVT_N Location: 261 044-261 281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261332-261980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 332-261 980 bp Feature: domain Description: GIIM Note: maturase Location: 262037-262268 bp Feature: domain Description: GIIM Note: maturase Location: 262037-262268 bp Feature: gene Location: 262639-262881 bp Ori: QCQ43575.1 Feature: domain Description: DUF4134 Location: 262786-262876 bp Feature: domain Description: DUF41 34 Location: 262786-262876 bp Feature: gene Location: 262892-263215 bp Ori: QCQ43576.1 Feature: domain Description: DUF4133 Location: 262907-263171 bp Feature: domain Description: DUF41 33 Location: 262907-2631 71 bp Feature: gene Location: 801945-802325 bp Ori: QCQ43993.1 Feature: domain Description: DUF3876 Location: 802026-802290 bp Feature: domain Description: DUF3876 Location: 802026-802290 bp Feature: gene Location: 802349-802576 bp Ori: QCQ43994.1 Feature: domain Description: DUF4141 Location: 802364-802517 bp Feature: domain Description: DUF41 41 Location: 802364-80251 7 bp Feature: gene Location: 803127-804932 bp Ori: QCQ43995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803391-804213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803391 -80421 3 bp Feature: domain Description: matK Location: 804390-804603 bp Feature: domain Description: matK Location: 804390-804603 bp Feature: domain Description: HNHc Note: nucleases Location: 804765-804906 bp Feature: domain Description: HNHc Note: nucleases Location: 804765-804906 bp Feature: gene Location: 804925-805461 bp Feature: gene Location: 805465-806469 bp Ori: QCQ43997.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 805471-806440 bp Feature: domain Description: Bac_Flav_CT_J Location: 805471 -806440 bp Feature: gene Location: 1497873-1498877 bp Ori: QCQ44535.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 1497882-1498848 bp Feature: domain Description: Bac_Flav_CT_J Location: 1 497882-1 498848 bp Feature: gene Location: 1498881-1499417 bp Feature: gene Location: 1499410-1501215 bp Ori: QCQ44537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499674-1500496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 499674-1 500496 bp Feature: domain Description: matK Location: 1500673-1500886 bp Feature: domain Description: matK Location: 1 500673-1 500886 bp Feature: domain Description: HNHc Note: nucleases Location: 1501048-1501189 bp Feature: domain Description: HNHc Note: nucleases Location: 1 501 048-1 501 1 89 bp Feature: gene Location: 1501766-1501993 bp Ori: QCQ44538.1 Feature: domain Description: DUF4141 Location: 1501778-1501934 bp Feature: domain Description: DUF41 41 Location: 1 501 778-1 501 934 bp Feature: gene Location: 1502017-1502397 bp Ori: QCQ44539.1 Feature: domain Description: DUF3876 Location: 1502098-1502362 bp Feature: domain Description: DUF3876 Location: 1 502098-1 502362 bp Feature: gene Location: 1509223-1510470 bp Ori: QCQ44548.1 Feature: domain Description: Relaxase Location: 1509415-1509775 bp Feature: domain Description: Relaxase Location: 1 50941 5-1 509775 bp Feature: gene Location: 1510501-1511220 bp Feature: domain Description: YWFCY Location: 1510510-1510687 bp Feature: domain Description: YWFCY Location: 1 51 051 0-1 51 0687 bp Feature: gene Location: 1511847-1513502 bp Ori: QCQ44549.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1511901-1512144 bp Feature: domain Description: RVT_N Location: 1 51 1 901 -1 51 21 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512189-1512834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 21 89-1 51 2834 bp Feature: domain Description: GIIM Note: maturase Location: 1512885-1513119 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 2885-1 51 31 1 9 bp Feature: gene Location: 1513607-1514905 bp Feature: domain Description: TraG-D_C Location: 1514273-1514603 bp Feature: domain Description: TraG-D_C Location: 1 51 4273-1 51 4603 bp Feature: gene Location: 1515037-1518291 bp Ori: QCQ44550.1 Feature: domain Description: KAP_NTPase Location: 1515175-1516153 bp Feature: domain Description: KAP_NTPase Location: 1 51 51 75-1 51 61 53 bp Feature: gene Location: 2185255-2187444 bp Ori: QCQ45023.1 Feature: domain Description: GlnA3 Location: 2185327-2187442 bp Feature: domain Description: GlnA3 Location: 21 85327-21 87442 bp Feature: gene Location: 2187656-2189875 bp Feature: gene Location: 2190079-2191194 bp Ori: QCQ45025.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2190394-2190946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 90394-21 90946 bp Feature: gene Location: 2191336-2193129 bp Ori: QCQ45026.1 Feature: domain Description: rpsA Location: 2191414-2193022 bp Feature: domain Description: rpsA Location: 21 91 41 4-21 93022 bp Feature: gene Location: 2193253-2194167 bp Ori: QCQ45027.1 Feature: domain Description: RNase_Z Location: 2193268-2194159 bp Feature: domain Description: RNase_Z Location: 21 93268-21 941 59 bp Feature: gene Location: 2503265-2503627 bp Ori: QCQ45270.1 Feature: domain Description: DUF4133 Location: 2503310-2503577 bp Feature: domain Description: DUF41 33 Location: 250331 0-2503577 bp Feature: gene Location: 2503638-2503880 bp Ori: QCQ45271.1 Feature: domain Description: DUF4134 Location: 2503785-2503875 bp Feature: domain Description: DUF41 34 Location: 2503785-2503875 bp Feature: gene Location: 2503877-2505532 bp Ori: QCQ45272.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2503934-2504171 bp Feature: domain Description: RVT_N Location: 2503934-25041 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504222-2504870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504222-2504870 bp Feature: domain Description: GIIM Note: maturase Location: 2504927-2505158 bp Feature: domain Description: GIIM Note: maturase Location: 2504927-25051 58 bp Feature: gene Location: 2505828-2506127 bp Feature: gene Location: 2506148-2506363 bp Ori: QCQ45274.1 Feature: domain Description: DUF4134 Location: 2506166-2506349 bp Feature: domain Description: DUF41 34 Location: 25061 66-2506349 bp Feature: gene Location: 3718141-3718347 bp Feature: gene Location: 3718483-3718740 bp Feature: gene Location: 3718666-3720020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719002-3719158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 9002-371 91 58 bp Feature: gene Location: 3720310-3720555 bp Feature: gene Location: 3720905-3722074 bp Ori: QCQ47634.1 Feature: domain Description: KOG1378 Location: 3721016-3721928 bp Feature: domain Description: KOG1 378 Location: 3721 01 6-3721 928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF3876 (pfam12992), DUF4141 (pfam13605), matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)
Relaxase (pfam03432), YWFCY (pfam14293), TraG-D_C (pfam12696), KAP_NTPase (pfam07693), GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), KOG1378 (KOG1378, Purple acid phosphatase )