myRT

myRT report for GCA_000710375.3_ASM71037v3

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Seq: CP036539.1 Bacteroides fragilis strain DCMOUH0017B chromosome, complete genome (5474541 bp)
Overview 1 RT 1: 792802-803601 bp 2 RT 2: 1753175-1756348 bp 3 RT 3: 2182976-2191886 bp 4 RT 4: 3252216-3259962 bp Neighborhood of RT #1 [792802, 803690] N6_Mtase COG4646 RVT_N RVT-GII GIIM PRK13351 PRK13351 Neighborhood of RT #2 [1753175, 1756348] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Neighborhood of RT #3 [2182976, 2191894] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #4 [3252216, 3260327] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 792802-797490 bp Ori: QCQ52961.1 Feature: domain Description: N6_Mtase Location: 793114-793717 bp Feature: domain Description: N6_Mtase Location: 7931 1 4-79371 7 bp Feature: domain Description: COG4646 Location: 795046-797107 bp Feature: domain Description: COG4646 Location: 795046-7971 07 bp Feature: gene Location: 797978-798181 bp Feature: gene Location: 798147-799814 bp Ori: QCQ52963.1 Gene: ltrA Feature: domain Description: RVT_N Location: 798201-798444 bp Feature: domain Description: RVT_N Location: 798201 -798444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798489-799137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798489-7991 37 bp Feature: domain Description: GIIM Note: maturase Location: 799191-799422 bp Feature: domain Description: GIIM Note: maturase Location: 7991 91 -799422 bp Feature: gene Location: 799816-801081 bp Feature: gene Location: 801744-803690 bp Ori: QCQ52964.1 Gene: tet(Q) Feature: domain Description: PRK13351 Location: 801747-802215 bp Feature: domain Description: PRK1 3351 Location: 801 747-80221 5 bp Feature: domain Description: PRK13351 Location: 802260-803601 bp Feature: domain Description: PRK1 3351 Location: 802260-803601 bp Feature: gene Location: 1753175-1754230 bp Ori: QCQ53676.1 Feature: domain Description: NHL Location: 1753397-1753763 bp Feature: domain Description: NHL Location: 1 753397-1 753763 bp Feature: domain Description: 7WD40 Location: 1753814-1754195 bp Feature: domain Description: 7WD40 Location: 1 75381 4-1 7541 95 bp Feature: gene Location: 1754803-1755066 bp Feature: gene Location: 1755053-1755430 bp Ori: QCQ53678.1 Feature: domain Description: RVT_N Location: 1755056-1755281 bp Feature: domain Description: RVT_N Location: 1 755056-1 755281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1755335-1755404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 755335-1 755404 bp Feature: gene Location: 1755408-1755605 bp Ori: QCQ53679.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1755411-1755603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75541 1 -1 755603 bp Feature: gene Location: 1755726-1756016 bp Ori: QCQ53680.1 Feature: domain Description: HTH_28 Location: 1755750-1755897 bp Feature: domain Description: HTH_28 Location: 1 755750-1 755897 bp Feature: gene Location: 1756160-1756348 bp Feature: gene Location: 2182976-2185165 bp Ori: QCQ53989.1 Feature: domain Description: GlnA3 Location: 2183048-2185163 bp Feature: domain Description: GlnA3 Location: 21 83048-21 851 63 bp Feature: gene Location: 2185377-2187596 bp Feature: gene Location: 2187806-2188921 bp Ori: QCQ53991.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2188121-2188673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 881 21 -21 88673 bp Feature: gene Location: 2189063-2190856 bp Ori: QCQ53992.1 Feature: domain Description: rpsA Location: 2189141-2190749 bp Feature: domain Description: rpsA Location: 21 891 41 -21 90749 bp Feature: gene Location: 2190980-2191894 bp Ori: QCQ53993.1 Feature: domain Description: RNase_Z Location: 2190995-2191886 bp Feature: domain Description: RNase_Z Location: 21 90995-21 91 886 bp Feature: gene Location: 3252216-3253445 bp Feature: gene Location: 3253432-3253581 bp Feature: gene Location: 3253549-3255216 bp Ori: QCQ54832.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3253603-3253846 bp Feature: domain Description: RVT_N Location: 3253603-3253846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253891-3254539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3253891 -3254539 bp Feature: domain Description: GIIM Note: maturase Location: 3254593-3254824 bp Feature: domain Description: GIIM Note: maturase Location: 3254593-3254824 bp Feature: gene Location: 3255182-3255385 bp Feature: gene Location: 3255894-3260327 bp Feature: domain Description: N6_Mtase Location: 3256194-3256851 bp Feature: domain Description: N6_Mtase Location: 32561 94-3256851 bp Feature: domain Description: COG4646 Location: 3257670-3259962 bp Feature: domain Description: COG4646 Location: 3257670-3259962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13351 (elongation factor G-like protein), NHL (pfam01436), 7WD40 (sd00039), HTH_28 (pfam13518), GlnA3 (COG3968)
RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: CP036540.1 Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence (85671 bp)
Overview 1 RT 1: 8115-17468 bp Neighborhood of RT #1 [8115, 17830] DUF4116 DUF4116 DUF4116 DUF4116 RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 8115-9851 bp Ori: QCQ56815.1 Feature: domain Description: DUF4116 Location: 8463-8580 bp Feature: domain Description: DUF4116 Location: 8463-8580 bp Feature: domain Description: DUF4116 Location: 8598-8709 bp Feature: domain Description: DUF4116 Location: 8598-8709 bp Feature: domain Description: DUF4116 Location: 8730-8778 bp Feature: domain Description: DUF4116 Location: 8730-8778 bp Feature: domain Description: DUF4116 Location: 8961-9045 bp Feature: domain Description: DUF4116 Location: 8961-9045 bp Feature: gene Location: 9884-11248 bp Feature: gene Location: 11367-13034 bp Ori: QCQ56816.1 Gene: ltrA Feature: domain Description: RVT_N Location: 11421-11664 bp Feature: domain Description: RVT_N Location: 1142 1-11664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11709-12357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11709-12 357 bp Feature: domain Description: GIIM Note: maturase Location: 12411-12642 bp Feature: domain Description: GIIM Note: maturase Location: 12 411-12 642 bp Feature: gene Location: 13000-13203 bp Feature: gene Location: 13712-17830 bp Feature: domain Description: COG4646 Location: 15410-17468 bp Feature: domain Description: COG4646 Location: 15410-17468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4116 (pfam13475), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class )