myRT

myRT report for GCA_000715175.2_ASM71517v2

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Seq: CP021185.1 Sphingomonas sp. DC-6 plasmid pDC04, complete sequence (95350 bp)
Overview 1 RT 1: 79773-84138 bp Neighborhood of RT #1 [79773, 84161] RVT-GII Intron_maturas2 ArdC Feature: gene Location: 79773-79973 bp Feature: gene Location: 80016-80357 bp Feature: gene Location: 80424-82301 bp Ori: ARR57825.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80691-81528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80691 -81 528 bp Feature: domain Description: Intron_maturas2 Location: 81618-81897 bp Feature: domain Description: Intron_maturas2 Location: 81 61 8-81 897 bp Feature: gene Location: 82910-83176 bp Feature: gene Location: 83220-84161 bp Ori: ARR57826.1 Feature: domain Description: ArdC Location: 83247-84138 bp Feature: domain Description: ArdC Location: 83247-841 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), ArdC (COG4227)

Seq: CP021181.1 Sphingomonas sp. DC-6 chromosome, complete genome (5921052 bp)
Overview 1 RT 1: 438451-444822 bp 2 RT 2: 1434981-1444038 bp 3 RT 3: 5320395-5325412 bp Neighborhood of RT #1 [438451, 444822] MPP_Mre11_N RVT-Retrons ArdC Neighborhood of RT #2 [1434981, 1444046] mdoG RVT-Retrons Trypsin_2 HTH_XRE RVT-Retrons Uup SMC_prok_A Neighborhood of RT #3 [5320395, 5325747] RVT-Retrons YbjD YbjD Feature: gene Location: 438451-439560 bp Ori: ARR52345.1 Feature: domain Description: MPP_Mre11_N Location: 438457-439090 bp Feature: domain Description: MPP_Mre11_N Location: 438457-439090 bp Feature: gene Location: 439762-440988 bp Feature: gene Location: 441174-442319 bp Ori: ARR52346.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441399-442035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441399-442 035 bp Feature: gene Location: 442791-443729 bp Ori: ARR52347.1 Feature: domain Description: ArdC Location: 442824-443664 bp Feature: domain Description: ArdC Location: 442 82 4-443664 bp Feature: gene Location: 443809-444822 bp Feature: gene Location: 1434981-1436528 bp Ori: ARR57090.1 Feature: domain Description: mdoG Location: 1435074-1436526 bp Feature: domain Description: mdoG Location: 1435074-143652 6 bp Feature: gene Location: 1437179-1437394 bp Feature: gene Location: 1437766-1439349 bp Ori: ARR53185.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1437925-1438525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143792 5-143852 5 bp Feature: domain Description: Trypsin_2 Location: 1438867-1439269 bp Feature: domain Description: Trypsin_2 Location: 1438867-14392 69 bp Feature: gene Location: 1439950-1440264 bp Ori: ARR57091.1 Feature: domain Description: HTH_XRE Location: 1439977-1440145 bp Feature: domain Description: HTH_XRE Location: 1439977-1440145 bp Feature: gene Location: 1440251-1441291 bp Ori: ARR53186.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1440431-1440929 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1440431-144092 9 bp Feature: gene Location: 1441559-1442032 bp Feature: gene Location: 1442136-1444046 bp Ori: ARR53188.1 Feature: domain Description: Uup Location: 1442139-1443684 bp Feature: domain Description: Uup Location: 1442 139-1443684 bp Feature: domain Description: SMC_prok_A Location: 1443756-1444038 bp Feature: domain Description: SMC_prok_A Location: 1443756-1444038 bp Feature: gene Location: 5320395-5321660 bp Feature: gene Location: 5322004-5322267 bp Feature: gene Location: 5322283-5323032 bp Ori: ARR56481.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5322286-5322769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 532 2 2 86-532 2 769 bp Feature: gene Location: 5323134-5323652 bp Feature: gene Location: 5323789-5325747 bp Ori: ARR56483.1 Feature: domain Description: YbjD Location: 5323792-5324095 bp Feature: domain Description: YbjD Location: 532 3792 -532 4095 bp Feature: domain Description: YbjD Location: 5324593-5325412 bp Feature: domain Description: YbjD Location: 532 4593-532 5412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_Mre11_N (cd00840), RVT-Retrons, ArdC (COG4227), mdoG (PRK13274), Trypsin_2 (pfam13365), HTH_XRE (smart00530), Uup (COG0488), SMC_prok_A (TIGR02169), YbjD (COG3593)