myRT

myRT report for GCA_000723505.1_Mucivorans_M3_Nelson-Bomar-Fixed

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Seq: HG934468.1 Mucinivorans hirudinis complete genome (3149227 bp)
Overview 1 RT 1: 358493-368606 bp 2 RT 2: 508104-513228 bp 3 RT 3: 516022-519918 bp 4 RT 4: 1849230-1853919 bp 5 RT 5: 2481416-2486456 bp Neighborhood of RT #1 [358493, 368623] Bac_Flav_CT_N Bac_Flav_CT_M RVT-GII Intron_maturas2 Bac_Flav_CT_M DUF3989 Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 DUF3876 Neighborhood of RT #2 [508104, 513257] Bac_Flav_CT_N Bac_Flav_CT_M RVT-GII Intron_maturas2 Bac_Flav_CT_M DUF3989 Neighborhood of RT #3 [516022, 519935] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 DUF3876 Neighborhood of RT #4 [1849230, 1853942] ATPase_2 RVT-Retrons HTH_17 HTH_17 HTH_17 HTH_17 Neighborhood of RT #5 [2481416, 2486458] DUF3989 Bac_Flav_CT_M RVT-GII IS5 KOG4768 Feature: gene Location: 358493-359446 bp Ori: CDN30470.1 Feature: domain Description: Bac_Flav_CT_N Location: 358532-359426 bp Feature: domain Description: Bac_Flav_CT_N Location: 358532-359426 bp Feature: gene Location: 359466-359732 bp Ori: CDN30471.1 Feature: domain Description: Bac_Flav_CT_M Location: 359496-359727 bp Feature: domain Description: Bac_Flav_CT_M Location: 359496-359727 bp Feature: gene Location: 359821-361644 bp Ori: CDN30472.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360106-360928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3601 06-360928 bp Feature: domain Description: Intron_maturas2 Location: 361000-361324 bp Feature: domain Description: Intron_maturas2 Location: 361 000-361 324 bp Feature: gene Location: 362197-363321 bp Ori: CDN30473.1 Feature: domain Description: Bac_Flav_CT_M Location: 362272-363310 bp Feature: domain Description: Bac_Flav_CT_M Location: 362272-36331 0 bp Feature: gene Location: 363302-363580 bp Ori: CDN30474.1 Feature: domain Description: DUF3989 Location: 363320-363551 bp Feature: domain Description: DUF3989 Location: 363320-363551 bp Feature: gene Location: 364221-365219 bp Ori: CDN30476.1 Feature: domain Description: Bac_Flav_CT_J Location: 364227-365196 bp Feature: domain Description: Bac_Flav_CT_J Location: 364227-3651 96 bp Feature: gene Location: 365223-365777 bp Feature: gene Location: 365767-367434 bp Ori: CDN30478.1 Feature: domain Description: RVT_N Location: 365821-366064 bp Feature: domain Description: RVT_N Location: 365821 -366064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366109-366763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661 09-366763 bp Feature: domain Description: GIIM Note: maturase Location: 366817-367048 bp Feature: domain Description: GIIM Note: maturase Location: 36681 7-367048 bp Feature: gene Location: 368030-368224 bp Ori: CDN30479.1 Feature: domain Description: DUF4141 Location: 368033-368180 bp Feature: domain Description: DUF41 41 Location: 368033-3681 80 bp Feature: gene Location: 368255-368623 bp Ori: CDN30480.1 Feature: domain Description: DUF3876 Location: 368336-368606 bp Feature: domain Description: DUF3876 Location: 368336-368606 bp Feature: gene Location: 508104-509057 bp Ori: CDN30650.1 Feature: domain Description: Bac_Flav_CT_N Location: 508143-509037 bp Feature: domain Description: Bac_Flav_CT_N Location: 5081 43-509037 bp Feature: gene Location: 509077-509343 bp Ori: CDN30651.1 Feature: domain Description: Bac_Flav_CT_M Location: 509107-509338 bp Feature: domain Description: Bac_Flav_CT_M Location: 5091 07-509338 bp Feature: gene Location: 509432-511255 bp Ori: CDN30652.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509717-510539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50971 7-51 0539 bp Feature: domain Description: Intron_maturas2 Location: 510611-510935 bp Feature: domain Description: Intron_maturas2 Location: 51 061 1 -51 0935 bp Feature: gene Location: 511808-512998 bp Ori: CDN30653.1 Feature: domain Description: Bac_Flav_CT_M Location: 511883-512987 bp Feature: domain Description: Bac_Flav_CT_M Location: 51 1 883-51 2987 bp Feature: gene Location: 512979-513257 bp Ori: CDN30654.1 Feature: domain Description: DUF3989 Location: 512997-513228 bp Feature: domain Description: DUF3989 Location: 51 2997-51 3228 bp Feature: gene Location: 516022-516531 bp Ori: CDN30659.1 Feature: domain Description: Bac_Flav_CT_J Location: 516043-516523 bp Feature: domain Description: Bac_Flav_CT_J Location: 51 6043-51 6523 bp Feature: gene Location: 516535-517089 bp Feature: gene Location: 517079-518746 bp Ori: CDN30661.1 Feature: domain Description: RVT_N Location: 517133-517376 bp Feature: domain Description: RVT_N Location: 51 71 33-51 7376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517421-518075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7421 -51 8075 bp Feature: domain Description: GIIM Note: maturase Location: 518129-518360 bp Feature: domain Description: GIIM Note: maturase Location: 51 81 29-51 8360 bp Feature: gene Location: 519342-519536 bp Ori: CDN30662.1 Feature: domain Description: DUF4141 Location: 519345-519492 bp Feature: domain Description: DUF41 41 Location: 51 9345-51 9492 bp Feature: gene Location: 519567-519935 bp Ori: CDN30663.1 Feature: domain Description: DUF3876 Location: 519648-519918 bp Feature: domain Description: DUF3876 Location: 51 9648-51 991 8 bp Feature: gene Location: 1849230-1849373 bp Feature: gene Location: 1849401-1850525 bp Ori: CDN31913.1 Feature: domain Description: ATPase_2 Location: 1849455-1850184 bp Feature: domain Description: ATPase_2 Location: 1 849455-1 8501 84 bp Feature: gene Location: 1850545-1851405 bp Ori: CDN31914.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1850704-1851217 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 850704-1 851 21 7 bp Feature: gene Location: 1852147-1852278 bp Feature: gene Location: 1852794-1853942 bp Ori: CDN31916.1 Feature: domain Description: HTH_17 Location: 1853043-1853184 bp Feature: domain Description: HTH_1 7 Location: 1 853043-1 8531 84 bp Feature: domain Description: HTH_17 Location: 1853268-1853403 bp Feature: domain Description: HTH_1 7 Location: 1 853268-1 853403 bp Feature: domain Description: HTH_17 Location: 1853442-1853583 bp Feature: domain Description: HTH_1 7 Location: 1 853442-1 853583 bp Feature: domain Description: HTH_17 Location: 1853781-1853919 bp Feature: domain Description: HTH_1 7 Location: 1 853781 -1 85391 9 bp Feature: gene Location: 2481416-2481694 bp Ori: CDN32505.1 Feature: domain Description: DUF3989 Location: 2481437-2481659 bp Feature: domain Description: DUF3989 Location: 2481 437-2481 659 bp Feature: gene Location: 2481675-2482799 bp Ori: CDN32506.1 Feature: domain Description: Bac_Flav_CT_M Location: 2481750-2482788 bp Feature: domain Description: Bac_Flav_CT_M Location: 2481 750-2482788 bp Feature: gene Location: 2483352-2484581 bp Ori: CDN32507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483637-2484459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483637-2484459 bp Feature: gene Location: 2484684-2485751 bp Ori: CDN32508.1 Feature: domain Description: IS5 Location: 2484906-2485710 bp Feature: domain Description: IS5 Location: 2484906-248571 0 bp Feature: gene Location: 2486045-2486458 bp Ori: CDN32509.1 Feature: domain Description: KOG4768 Location: 2486051-2486456 bp Feature: domain Description: KOG4768 Location: 2486051 -2486456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), Bac_Flav_CT_M (TIGR03779), RVT-GII, Intron_maturas2 (pfam01348), DUF3989 (pfam13150), Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), GIIM (pfam08388), DUF4141 (pfam13605), DUF3876 (pfam12992)
ATPase_2 (pfam01637), RVT-Retrons, HTH_17 (pfam12728), IS5 (COG3039), KOG4768 (KOG4768, Mitochondrial mRNA maturase )