myRT

myRT report for GCA_000724805.2_ASM72480v2

Download annotations/find similar RTs

Seq: CP036553.1 Bacteroides fragilis strain DCMOUH0067B chromosome, complete genome (5478614 bp)
Overview 1 RT 1: 2016395-2025305 bp 2 RT 2: 3126529-3130075 bp 3 RT 3: 3294997-3300585 bp 4 RT 4: 3513233-3519472 bp 5 RT 5: 4482855-4489094 bp Neighborhood of RT #1 [2016395, 2025313] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [3126529, 3130089] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Neighborhood of RT #3 [3294997, 3300608] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #4 [3513233, 3519519] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #5 [4482855, 4489141] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 2016395-2018584 bp Ori: QCQ36099.1 Feature: domain Description: GlnA3 Location: 2016467-2018582 bp Feature: domain Description: GlnA3 Location: 201 6467-201 8582 bp Feature: gene Location: 2018796-2021015 bp Feature: gene Location: 2021225-2022340 bp Ori: QCQ36101.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2021540-2022092 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2021 540-2022092 bp Feature: gene Location: 2022482-2024275 bp Ori: QCQ36102.1 Feature: domain Description: rpsA Location: 2022560-2024168 bp Feature: domain Description: rpsA Location: 2022560-20241 68 bp Feature: gene Location: 2024399-2025313 bp Ori: QCQ36103.1 Feature: domain Description: RNase_Z Location: 2024414-2025305 bp Feature: domain Description: RNase_Z Location: 202441 4-2025305 bp Feature: gene Location: 3126529-3126825 bp Ori: QCQ36984.1 Feature: domain Description: DUF4133 Location: 3126571-3126748 bp Feature: domain Description: DUF41 33 Location: 31 26571 -31 26748 bp Feature: gene Location: 3126838-3127032 bp Ori: QCQ36985.1 Feature: domain Description: DUF4134 Location: 3126928-3127018 bp Feature: domain Description: DUF41 34 Location: 31 26928-31 2701 8 bp Feature: gene Location: 3127057-3128868 bp Ori: QCQ36986.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3127321-3128143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 27321 -31 281 43 bp Feature: domain Description: Intron_maturas2 Location: 3128332-3128542 bp Feature: domain Description: Intron_maturas2 Location: 31 28332-31 28542 bp Feature: domain Description: HNHc Note: nucleases Location: 3128692-3128797 bp Feature: domain Description: HNHc Note: nucleases Location: 31 28692-31 28797 bp Feature: gene Location: 3129410-3129688 bp Ori: QCQ36987.1 Feature: domain Description: DUF4134 Location: 3129470-3129671 bp Feature: domain Description: DUF41 34 Location: 31 29470-31 29671 bp Feature: gene Location: 3129763-3130089 bp Ori: QCQ36988.1 Feature: domain Description: DUF4134 Location: 3129784-3130075 bp Feature: domain Description: DUF41 34 Location: 31 29784-31 30075 bp Feature: gene Location: 3294997-3295323 bp Ori: QCQ37133.1 Feature: domain Description: DUF4133 Location: 3295015-3295282 bp Feature: domain Description: DUF41 33 Location: 329501 5-3295282 bp Feature: gene Location: 3295320-3296135 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 3295323-3296136 bp Feature: domain Description: Bac_Flav_CT_G Location: 3295323-32961 36 bp Feature: gene Location: 3296761-3298437 bp Ori: QCQ37134.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3296818-3297055 bp Feature: domain Description: RVT_N Location: 329681 8-3297055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3297106-3297754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32971 06-3297754 bp Feature: domain Description: GIIM Note: maturase Location: 3297805-3298039 bp Feature: domain Description: GIIM Note: maturase Location: 3297805-3298039 bp Feature: gene Location: 3298532-3300223 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 3298535-3300206 bp Feature: domain Description: Bac_Flav_CT_G Location: 3298535-3300206 bp Feature: gene Location: 3300252-3300608 bp Ori: QCQ37135.1 Feature: domain Description: DUF3876 Location: 3300315-3300585 bp Feature: domain Description: DUF3876 Location: 330031 5-3300585 bp Feature: gene Location: 3513233-3514282 bp Feature: gene Location: 3514295-3516019 bp Ori: QCQ37317.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 3514427-3515987 bp Feature: domain Description: Bac_Flav_CT_G Location: 351 4427-351 5987 bp Feature: gene Location: 3516004-3517713 bp Ori: QCQ37318.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3516106-3516349 bp Feature: domain Description: RVT_N Location: 351 61 06-351 6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3516394-3517042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 6394-351 7042 bp Feature: domain Description: GIIM Note: maturase Location: 3517096-3517327 bp Feature: domain Description: GIIM Note: maturase Location: 351 7096-351 7327 bp Feature: gene Location: 3518267-3519190 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 3518270-3519191 bp Feature: domain Description: Bac_Flav_CT_G Location: 351 8270-351 91 91 bp Feature: gene Location: 3519187-3519519 bp Ori: QCQ37319.1 Feature: domain Description: DUF4133 Location: 3519205-3519472 bp Feature: domain Description: DUF41 33 Location: 351 9205-351 9472 bp Feature: gene Location: 4482855-4483904 bp Feature: gene Location: 4483917-4485641 bp Ori: QCQ38097.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 4484049-4485609 bp Feature: domain Description: Bac_Flav_CT_G Location: 4484049-4485609 bp Feature: gene Location: 4485626-4487335 bp Ori: QCQ38098.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4485728-4485971 bp Feature: domain Description: RVT_N Location: 4485728-4485971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4486016-4486664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448601 6-4486664 bp Feature: domain Description: GIIM Note: maturase Location: 4486718-4486949 bp Feature: domain Description: GIIM Note: maturase Location: 448671 8-4486949 bp Feature: gene Location: 4487889-4488812 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 4487892-4488813 bp Feature: domain Description: Bac_Flav_CT_G Location: 4487892-448881 3 bp Feature: gene Location: 4488809-4489141 bp Ori: QCQ38099.1 Feature: domain Description: DUF4133 Location: 4488827-4489094 bp Feature: domain Description: DUF41 33 Location: 4488827-4489094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)
RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)