myRT

myRT report for GCA_000724815.2_ASM72481v2

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Seq: CP037440.1 Bacteroides fragilis strain DCMOUH0085B chromosome, complete genome (5504076 bp)
Overview 1 RT 1: 1629745-1636625 bp 2 RT 2: 1683428-1688033 bp 3 RT 3: 2272018-2280928 bp 4 RT 4: 2961189-2967314 bp 5 RT 5: 3926022-3931906 bp 6 RT 6: 5054642-5060933 bp Neighborhood of RT #1 [1629745, 1636651] RVT_N RVT-GII GIIM VirD4 COG2865 Neighborhood of RT #2 [1683428, 1688033] DUF1738 RVT-GII Intron_maturas2 DUF1738 MPTase-PolyVal Neighborhood of RT #3 [2272018, 2280936] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #4 [2961189, 2967314] AtoC TMAO_torS RVT-GII Intron_maturas2 HNHc Neighborhood of RT #5 [3926022, 3931906] TraX TraG_VirD4 VirD4 RVT_N RVT-GII GIIM Peptidase_A22B Neighborhood of RT #6 [5054642, 5060933] dnaG RVT-UG24 Feature: gene Location: 1629745-1630233 bp Feature: gene Location: 1630241-1630966 bp Feature: gene Location: 1631593-1633248 bp Ori: QCQ31365.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1631647-1631890 bp Feature: domain Description: RVT_N Location: 1 631 647-1 631 890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631935-1632580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 631 935-1 632580 bp Feature: domain Description: GIIM Note: maturase Location: 1632631-1632865 bp Feature: domain Description: GIIM Note: maturase Location: 1 632631 -1 632865 bp Feature: gene Location: 1633353-1634813 bp Feature: domain Description: VirD4 Location: 1633890-1634340 bp Feature: domain Description: VirD4 Location: 1 633890-1 634340 bp Feature: gene Location: 1634999-1636651 bp Ori: QCQ31366.1 Feature: domain Description: COG2865 Location: 1635008-1636625 bp Feature: domain Description: COG2865 Location: 1 635008-1 636625 bp Feature: gene Location: 1683428-1683622 bp Feature: domain Description: DUF1738 Location: 1683482-1683623 bp Feature: domain Description: DUF1 738 Location: 1 683482-1 683623 bp Feature: gene Location: 1683924-1684178 bp Feature: gene Location: 1684192-1685997 bp Ori: QCQ31414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684456-1685278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 684456-1 685278 bp Feature: domain Description: Intron_maturas2 Location: 1685455-1685677 bp Feature: domain Description: Intron_maturas2 Location: 1 685455-1 685677 bp Feature: gene Location: 1685990-1687606 bp Ori: QCQ31415.1 Feature: domain Description: DUF1738 Location: 1686116-1686392 bp Feature: domain Description: DUF1 738 Location: 1 6861 1 6-1 686392 bp Feature: domain Description: MPTase-PolyVal Location: 1686554-1686866 bp Feature: domain Description: MPTase-PolyVal Location: 1 686554-1 686866 bp Feature: gene Location: 1687665-1688033 bp Feature: gene Location: 2272018-2274207 bp Ori: QCQ31870.1 Feature: domain Description: GlnA3 Location: 2272090-2274205 bp Feature: domain Description: GlnA3 Location: 2272090-2274205 bp Feature: gene Location: 2274419-2276638 bp Feature: gene Location: 2276848-2277963 bp Ori: QCQ31872.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2277163-2277715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22771 63-227771 5 bp Feature: gene Location: 2278105-2279898 bp Ori: QCQ31873.1 Feature: domain Description: rpsA Location: 2278183-2279791 bp Feature: domain Description: rpsA Location: 22781 83-2279791 bp Feature: gene Location: 2280022-2280936 bp Ori: QCQ31874.1 Feature: domain Description: RNase_Z Location: 2280037-2280928 bp Feature: domain Description: RNase_Z Location: 2280037-2280928 bp Feature: gene Location: 2961189-2962493 bp Ori: QCQ32397.1 Feature: domain Description: AtoC Location: 2961195-2962488 bp Feature: domain Description: AtoC Location: 2961 1 95-2962488 bp Feature: gene Location: 2962490-2963947 bp Ori: QCQ32398.1 Feature: domain Description: TMAO_torS Location: 2962535-2963759 bp Feature: domain Description: TMAO_torS Location: 2962535-2963759 bp Feature: gene Location: 2964588-2966399 bp Ori: QCQ32399.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2964852-2965674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2964852-2965674 bp Feature: domain Description: Intron_maturas2 Location: 2965863-2966073 bp Feature: domain Description: Intron_maturas2 Location: 2965863-2966073 bp Feature: domain Description: HNHc Note: nucleases Location: 2966223-2966328 bp Feature: domain Description: HNHc Note: nucleases Location: 2966223-2966328 bp Feature: gene Location: 2966424-2966537 bp Feature: gene Location: 2966508-2967314 bp Feature: gene Location: 3926022-3926705 bp Ori: QCQ33151.1 Feature: domain Description: TraX Location: 3926058-3926694 bp Feature: domain Description: TraX Location: 3926058-3926694 bp Feature: gene Location: 3926717-3928312 bp Feature: domain Description: TraG_VirD4 Location: 3926834-3927194 bp Feature: domain Description: TraG_VirD4 Location: 3926834-39271 94 bp Feature: domain Description: VirD4 Location: 3927365-3927890 bp Feature: domain Description: VirD4 Location: 3927365-3927890 bp Feature: gene Location: 3928417-3930072 bp Ori: QCQ33152.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3928471-3928714 bp Feature: domain Description: RVT_N Location: 3928471 -392871 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928759-3929404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3928759-3929404 bp Feature: domain Description: GIIM Note: maturase Location: 3929455-3929689 bp Feature: domain Description: GIIM Note: maturase Location: 3929455-3929689 bp Feature: gene Location: 3930699-3931412 bp Feature: domain Description: Peptidase_A22B Location: 3930930-3931278 bp Feature: domain Description: Peptidase_A22B Location: 3930930-3931 278 bp Feature: gene Location: 3931433-3931906 bp Feature: gene Location: 5054642-5055682 bp Ori: QCQ34045.1 Feature: domain Description: dnaG Location: 5054726-5055668 bp Feature: domain Description: dnaG Location: 5054726-5055668 bp Feature: gene Location: 5055688-5056365 bp Feature: gene Location: 5056385-5059810 bp Ori: QCQ34047.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 5056898-5057363 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 5056898-5057363 bp Feature: gene Location: 5059943-5060218 bp Feature: gene Location: 5060316-5060933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirD4 (COG3505), COG2865 (Predicted transcriptional regulator, contains HTH domain ), DUF1738 (pfam08401), Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818), GlnA3 (COG3968), RVT-Retrons
rpsA (TIGR00717), RNase_Z (TIGR02651), AtoC (COG2204), TMAO_torS (TIGR02956), HNHc (smart00507), TraX (pfam05857), TraG_VirD4, Peptidase_A22B (pfam04258), dnaG (TIGR01391), RVT-UG24