myRT

myRT report for GCA_000730425.1_ASM73042v1

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Seq: CP008896.1 Pseudomonas fluorescens strain UK4, complete genome (6064456 bp)
Overview 1 RT 1: 1428785-1432609 bp 2 RT 2: 2944094-2951018 bp 3 RT 3: 4098448-4104536 bp Neighborhood of RT #1 [1428785, 1432656] clpP tig RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [2944094, 2951101] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #3 [4098448, 4104685] RVT-Retrons McrBC Feature: gene Location: 1428785-1429420 bp Ori: AIG01763.1 Feature: domain Description: clpP Location: 1428839-1429412 bp Feature: domain Description: clpP Location: 1 428839-1 42941 2 bp Feature: gene Location: 1429513-1430823 bp Ori: AIG01764.1 Feature: domain Description: tig Location: 1429516-1430794 bp Feature: domain Description: tig Location: 1 42951 6-1 430794 bp Feature: gene Location: 1430953-1432656 bp Ori: AIG01765.1 Feature: domain Description: RVT_N Location: 1431010-1431253 bp Feature: domain Description: RVT_N Location: 1 431 01 0-1 431 253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1431298-1431934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 431 298-1 431 934 bp Feature: domain Description: GIIM Note: maturase Location: 1431985-1432219 bp Feature: domain Description: GIIM Note: maturase Location: 1 431 985-1 43221 9 bp Feature: domain Description: HNH Note: nucleases Location: 1432471-1432609 bp Feature: domain Description: HNH Note: nucleases Location: 1 432471 -1 432609 bp Feature: gene Location: 2944094-2945638 bp Ori: AIG03098.1 Feature: domain Description: CHD Location: 2944310-2944724 bp Feature: domain Description: CHD Location: 294431 0-2944724 bp Feature: domain Description: CHD Location: 2944952-2945441 bp Feature: domain Description: CHD Location: 2944952-2945441 bp Feature: gene Location: 2947220-2947483 bp Feature: gene Location: 2947633-2948901 bp Ori: AIG03100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2947846-2948503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2947846-2948503 bp Feature: domain Description: GIIM Note: maturase Location: 2948581-2948803 bp Feature: domain Description: GIIM Note: maturase Location: 2948581 -2948803 bp Feature: gene Location: 2949290-2949931 bp Ori: AIG03101.1 Feature: domain Description: DUF772 Location: 2949440-2949635 bp Feature: domain Description: DUF772 Location: 2949440-2949635 bp Feature: gene Location: 2950274-2951101 bp Ori: AIG03102.1 Feature: domain Description: ABC_phnC Location: 2950304-2951018 bp Feature: domain Description: ABC_phnC Location: 2950304-2951 01 8 bp Feature: gene Location: 4098448-4099233 bp Feature: gene Location: 4100058-4100594 bp Feature: gene Location: 4100855-4101778 bp Ori: AIG04110.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4100939-4101533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 00939-41 01 533 bp Feature: gene Location: 4101802-4102749 bp Feature: gene Location: 4103399-4104685 bp Ori: AIG04112.1 Feature: domain Description: McrBC Location: 4103573-4104536 bp Feature: domain Description: McrBC Location: 41 03573-41 04536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), CHD (cd07302), DUF772 (pfam05598), ABC_phnC (TIGR02315), RVT-Retrons
McrBC (pfam10117)