myRT

myRT report for GCA_000732355.1_ASM73235v1

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Seq: CP008921.1 Streptococcus suis 6407, complete genome (2292360 bp)
Overview 1 RT 1: 516875-526691 bp 2 RT 2: 532691-542895 bp 3 RT 3: 1085792-1089383 bp 4 RT 4: 1109551-1119031 bp 5 RT 5: 1542441-1550302 bp Neighborhood of RT #1 [516875, 526691] TrbL PrgI RVT_N RVT-GII GIIM Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #2 [532691, 542895] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #3 [1085792, 1089421] KOG1000 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [1109551, 1119078] PBECR4 Peptidase_M23 Phage_lysozyme2 PRK08581 RVT_N RVT-GII GIIM PrgI TrbL Neighborhood of RT #5 [1542441, 1550313] PRK13628 RVT_N RVT-GII GIIM COG3547 Uup Feature: gene Location: 516875-517729 bp Ori: AIG42998.1 Feature: domain Description: TrbL Location: 517241-517682 bp Feature: domain Description: TrbL Location: 51 7241 -51 7682 bp Feature: gene Location: 517791-518144 bp Ori: AIG42999.1 Feature: domain Description: PrgI Location: 517803-518076 bp Feature: domain Description: PrgI Location: 51 7803-51 8076 bp Feature: gene Location: 520123-521796 bp Ori: AIG43000.1 Feature: domain Description: RVT_N Location: 520195-520435 bp Feature: domain Description: RVT_N Location: 5201 95-520435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520483-521143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520483-521 1 43 bp Feature: domain Description: GIIM Note: maturase Location: 521212-521431 bp Feature: domain Description: GIIM Note: maturase Location: 521 21 2-521 431 bp Feature: gene Location: 522765-525566 bp Ori: AIG43001.1 Feature: domain Description: Peptidase_M23 Location: 524208-524421 bp Feature: domain Description: Peptidase_M23 Location: 524208-524421 bp Feature: domain Description: Phage_lysozyme2 Location: 524562-525075 bp Feature: domain Description: Phage_lysozyme2 Location: 524562-525075 bp Feature: domain Description: PRK08581 Location: 525192-525528 bp Feature: domain Description: PRK08581 Location: 5251 92-525528 bp Feature: gene Location: 525687-526691 bp Feature: gene Location: 532691-533242 bp Feature: gene Location: 533292-538769 bp Ori: AIG43006.1 Feature: domain Description: N6_Mtase Location: 535320-535911 bp Feature: domain Description: N6_Mtase Location: 535320-53591 1 bp Feature: domain Description: COG4646 Location: 536502-538626 bp Feature: domain Description: COG4646 Location: 536502-538626 bp Feature: gene Location: 539267-541045 bp Ori: AIG43007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539528-540320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539528-540320 bp Feature: domain Description: Intron_maturas2 Location: 540425-540656 bp Feature: domain Description: Intron_maturas2 Location: 540425-540656 bp Feature: domain Description: HNHc Note: nucleases Location: 540821-541007 bp Feature: domain Description: HNHc Note: nucleases Location: 540821 -541 007 bp Feature: gene Location: 541183-542526 bp Ori: AIG43008.1 Feature: domain Description: KOG1000 Location: 541462-541780 bp Feature: domain Description: KOG1 000 Location: 541 462-541 780 bp Feature: gene Location: 542596-542895 bp Feature: gene Location: 1085792-1086091 bp Feature: gene Location: 1086162-1087505 bp Ori: AIG43501.1 Feature: domain Description: KOG1000 Location: 1086441-1086756 bp Feature: domain Description: KOG1 000 Location: 1 086441 -1 086756 bp Feature: gene Location: 1087643-1089421 bp Ori: AIG43502.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1087904-1088696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 087904-1 088696 bp Feature: domain Description: Intron_maturas2 Location: 1088801-1089032 bp Feature: domain Description: Intron_maturas2 Location: 1 088801 -1 089032 bp Feature: domain Description: HNHc Note: nucleases Location: 1089197-1089383 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0891 97-1 089383 bp Feature: gene Location: 1109551-1110144 bp Ori: AIG43515.1 Feature: domain Description: PBECR4 Location: 1109569-1110124 bp Feature: domain Description: PBECR4 Location: 1 1 09569-1 1 1 01 24 bp Feature: gene Location: 1110389-1113193 bp Ori: AIG43516.1 Feature: domain Description: Peptidase_M23 Location: 1111835-1112039 bp Feature: domain Description: Peptidase_M23 Location: 1 1 1 1 835-1 1 1 2039 bp Feature: domain Description: Phage_lysozyme2 Location: 1112192-1112702 bp Feature: domain Description: Phage_lysozyme2 Location: 1 1 1 21 92-1 1 1 2702 bp Feature: domain Description: PRK08581 Location: 1112819-1113155 bp Feature: domain Description: PRK08581 Location: 1 1 1 281 9-1 1 1 31 55 bp Feature: gene Location: 1114163-1115836 bp Ori: AIG43517.1 Feature: domain Description: RVT_N Location: 1114235-1114475 bp Feature: domain Description: RVT_N Location: 1 1 1 4235-1 1 1 4475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114523-1115183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 4523-1 1 1 51 83 bp Feature: domain Description: GIIM Note: maturase Location: 1115252-1115471 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 5252-1 1 1 5471 bp Feature: gene Location: 1117809-1118162 bp Ori: AIG43518.1 Feature: domain Description: PrgI Location: 1117821-1118079 bp Feature: domain Description: PrgI Location: 1 1 1 7821 -1 1 1 8079 bp Feature: gene Location: 1118224-1119078 bp Ori: AIG43519.1 Feature: domain Description: TrbL Location: 1118623-1119031 bp Feature: domain Description: TrbL Location: 1 1 1 8623-1 1 1 9031 bp Feature: gene Location: 1542441-1543646 bp Ori: AIG43915.1 Feature: domain Description: PRK13628 Location: 1542447-1543632 bp Feature: domain Description: PRK1 3628 Location: 1 542447-1 543632 bp Feature: gene Location: 1543809-1544039 bp Feature: gene Location: 1544044-1545717 bp Ori: AIG43917.1 Feature: domain Description: RVT_N Location: 1544116-1544356 bp Feature: domain Description: RVT_N Location: 1 5441 1 6-1 544356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544404-1545064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 544404-1 545064 bp Feature: domain Description: GIIM Note: maturase Location: 1545133-1545352 bp Feature: domain Description: GIIM Note: maturase Location: 1 5451 33-1 545352 bp Feature: gene Location: 1546905-1548248 bp Ori: AIG43918.1 Feature: domain Description: COG3547 Location: 1547064-1548192 bp Feature: domain Description: COG3547 Location: 1 547064-1 5481 92 bp Feature: gene Location: 1548769-1550313 bp Ori: AIG43919.1 Feature: domain Description: Uup Location: 1548772-1550302 bp Feature: domain Description: Uup Location: 1 548772-1 550302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), PrgI (pfam12666), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PBECR4 (pfam18813), PRK13628 (serine/threonine transporter SstT; Provisional), COG3547 (Transposase ), Uup (COG0488)