myRT

myRT report for GCA_000743035.1_ASM74303v1

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Seq: CP008936.1 Candidatus Caedibacter acanthamoebae, complete genome (1722347 bp)
Overview 1 RT 1: 813434-819385 bp Neighborhood of RT #1 [813434, 819414] SrkA RVT-GII GIIM MscS Feature: gene Location: 813434-814390 bp Ori: AIL12897.1 Feature: domain Description: SrkA Location: 813515-814316 bp Feature: domain Description: SrkA Location: 81 351 5-81 431 6 bp Feature: gene Location: 814993-815196 bp Feature: gene Location: 815201-816481 bp Ori: AIL12899.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815477-816107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 5477-81 61 07 bp Feature: domain Description: GIIM Note: maturase Location: 816179-816383 bp Feature: domain Description: GIIM Note: maturase Location: 81 61 79-81 6383 bp Feature: gene Location: 817196-818125 bp Feature: gene Location: 818944-819414 bp Ori: AIL12901.1 Feature: domain Description: MscS Location: 818956-819385 bp Feature: domain Description: MscS Location: 81 8956-81 9385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SrkA (COG2334), RVT-GII, GIIM (pfam08388), MscS (COG0668)

Seq: CP008937.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00001, complete sequence (148131 bp)
Overview 1 RT 1: 55303-61351 bp 2 RT 2: 105774-110602 bp Neighborhood of RT #1 [55303, 61377] InsE PHA02517 RVT-GII GIIM HNHc W Neighborhood of RT #2 [105774, 110631] PinE DUF4158 RVT-GII GIIM COG3547 Feature: gene Location: 55303-55593 bp Ori: AIL13665.1 Feature: domain Description: InsE Location: 55315-55564 bp Feature: domain Description: InsE Location: 55315-55564 bp Feature: gene Location: 57233-58066 bp Ori: AIL13666.1 Feature: domain Description: PHA02517 Location: 57257-58040 bp Feature: domain Description: PHA02 517 Location: 572 57-58040 bp Feature: gene Location: 58769-59605 bp Ori: AIL13667.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58781-58892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58781-58892 bp Feature: domain Description: GIIM Note: maturase Location: 58946-59177 bp Feature: domain Description: GIIM Note: maturase Location: 58946-59177 bp Feature: domain Description: HNHc Note: nucleases Location: 59399-59561 bp Feature: domain Description: HNHc Note: nucleases Location: 59399-59561 bp Feature: gene Location: 59888-60403 bp Feature: gene Location: 61033-61377 bp Ori: AIL13669.1 Feature: domain Description: W Location: 61045-61351 bp Feature: domain Description: W Location: 61045-61351 bp Feature: gene Location: 105774-106349 bp Ori: AIL13699.1 Feature: domain Description: PinE Location: 105777-106329 bp Feature: domain Description: PinE Location: 105777-10632 9 bp Feature: gene Location: 106524-107702 bp Ori: AIL13700.1 Feature: domain Description: DUF4158 Location: 106530-107034 bp Feature: domain Description: DUF4158 Location: 106530-107034 bp Feature: gene Location: 108526-109806 bp Ori: AIL13701.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108802-109432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108802 -109432 bp Feature: domain Description: GIIM Note: maturase Location: 109504-109708 bp Feature: domain Description: GIIM Note: maturase Location: 109504-109708 bp Feature: gene Location: 109811-110014 bp Feature: gene Location: 110329-110631 bp Ori: AIL13703.1 Feature: domain Description: COG3547 Location: 110344-110602 bp Feature: domain Description: COG3547 Location: 110344-110602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HNHc (smart00507), W (PHA02516), PinE (COG1961), DUF4158 (pfam13700), COG3547 (Transposase )

Seq: CP008939.1 Candidatus Caedibacter acanthamoebae plasmid Plasmid_00003, complete sequence (169123 bp)
Overview 1 RT 1: 165811-167817 bp Neighborhood of RT #1 [165811, 167915] COG3547 RVT-GII GIIM Feature: gene Location: 165811-166119 bp Ori: AIL13893.1 Feature: domain Description: COG3547 Location: 165829-166090 bp Feature: domain Description: COG3 547 Location: 165829-166090 bp Feature: gene Location: 166427-166630 bp Feature: gene Location: 166635-167915 bp Ori: AIL13895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166911-167541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166911-167541 bp Feature: domain Description: GIIM Note: maturase Location: 167613-167817 bp Feature: domain Description: GIIM Note: maturase Location: 167613 -167817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)