myRT

myRT report for GCA_000746525.1_ASM74652v1

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Seq: CP009048.1 Pseudomonas alkylphenolica strain KL28 chromosome, complete genome (5764622 bp)
Overview 1 RT 1: 497603-506352 bp 2 RT 2: 1171591-1175800 bp 3 RT 3: 1843488-1847100 bp 4 RT 4: 1954078-1963201 bp 5 RT 5: 3028196-3038488 bp 6 RT 6: 3485415-3495418 bp 7 RT 7: 5450650-5458592 bp Neighborhood of RT #1 [497603, 506381] PRK10770 LptD RVT_N RVT-GII YkfC HNHc COG3178 NTP_transferase_like_1 Neighborhood of RT #2 [1171591, 1175800] HNH_3 RVT-G2L4 Neighborhood of RT #3 [1843488, 1847279] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #4 [1954078, 1963201] RVT_N RVT-GII YkfC HNHc Neighborhood of RT #5 [3028196, 3038553] cobalto_cobN CobW RVT_N RVT-GII YkfC HNHc 2OG-Fe_Oxy_2 F_threo_transal Neighborhood of RT #6 [3485415, 3495486] EmrA DUF2955 FUSC_2 RVT-GII PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII COG4584 COG4584 IstB_IS21_ATP IstB_IS21 Neighborhood of RT #7 [5450650, 5458642] PilM_2 PilM_2 RVT_N RVT-GII YkfC HNHc MrcA PRK07232 Feature: gene Location: 497603-498925 bp Ori: AIL59677.1 Feature: domain Description: PRK10770 Location: 497684-498893 bp Feature: domain Description: PRK1 0770 Location: 497684-498893 bp Feature: gene Location: 498900-501710 bp Ori: AIL59678.1 Feature: domain Description: LptD Location: 499326-501693 bp Feature: domain Description: LptD Location: 499326-501 693 bp Feature: gene Location: 501854-503563 bp Ori: AIL59679.1 Feature: domain Description: RVT_N Location: 501914-502157 bp Feature: domain Description: RVT_N Location: 501 91 4-5021 57 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502202-502838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502202-502838 bp Feature: domain Description: YkfC Location: 503036-503225 bp Feature: domain Description: YkfC Location: 503036-503225 bp Feature: domain Description: HNHc Note: nucleases Location: 503354-503507 bp Feature: domain Description: HNHc Note: nucleases Location: 503354-503507 bp Feature: gene Location: 504688-505713 bp Ori: AIL59680.1 Feature: domain Description: COG3178 Location: 504721-505696 bp Feature: domain Description: COG31 78 Location: 504721 -505696 bp Feature: gene Location: 505710-506381 bp Ori: AIL59681.1 Feature: domain Description: NTP_transferase_like_1 Location: 505716-506352 bp Feature: domain Description: NTP_transferase_like_1 Location: 50571 6-506352 bp Feature: gene Location: 1171591-1172097 bp Ori: AIL60301.1 Feature: domain Description: HNH_3 Location: 1171774-1171903 bp Feature: domain Description: HNH_3 Location: 1 1 71 774-1 1 71 903 bp Feature: gene Location: 1172636-1173175 bp Feature: gene Location: 1173248-1174513 bp Ori: AIL60303.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1173467-1174055 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1 1 73467-1 1 74055 bp Feature: gene Location: 1174575-1174769 bp Feature: gene Location: 1175357-1175800 bp Feature: gene Location: 1843488-1843808 bp Feature: gene Location: 1844701-1844889 bp Feature: gene Location: 1844895-1845896 bp Ori: AIL60903.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1844988-1845672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 844988-1 845672 bp Feature: gene Location: 1846252-1846554 bp Ori: AIL60904.1 Feature: domain Description: Avd_like Location: 1846261-1846534 bp Feature: domain Description: Avd_like Location: 1 846261 -1 846534 bp Feature: gene Location: 1846539-1847279 bp Ori: AIL60905.1 Feature: domain Description: DUF1566 Location: 1846767-1847100 bp Feature: domain Description: DUF1 566 Location: 1 846767-1 8471 00 bp Feature: gene Location: 1954078-1955268 bp Feature: gene Location: 1955261-1955725 bp Feature: gene Location: 1956852-1958561 bp Ori: AIL61018.1 Feature: domain Description: RVT_N Location: 1956912-1957155 bp Feature: domain Description: RVT_N Location: 1 95691 2-1 9571 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957200-1957836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 957200-1 957836 bp Feature: domain Description: YkfC Location: 1958034-1958223 bp Feature: domain Description: YkfC Location: 1 958034-1 958223 bp Feature: domain Description: HNHc Note: nucleases Location: 1958352-1958505 bp Feature: domain Description: HNHc Note: nucleases Location: 1 958352-1 958505 bp Feature: gene Location: 1958425-1959759 bp Feature: gene Location: 1959752-1963201 bp Feature: gene Location: 3028196-3031957 bp Ori: AIL61914.1 Feature: domain Description: cobalto_cobN Location: 3028199-3031940 bp Feature: domain Description: cobalto_cobN Location: 30281 99-3031 940 bp Feature: gene Location: 3031961-3033028 bp Ori: AIL61915.1 Feature: domain Description: CobW Location: 3031976-3033005 bp Feature: domain Description: CobW Location: 3031 976-3033005 bp Feature: gene Location: 3034853-3036562 bp Ori: AIL61916.1 Feature: domain Description: RVT_N Location: 3034913-3035156 bp Feature: domain Description: RVT_N Location: 303491 3-30351 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3035201-3035837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3035201 -3035837 bp Feature: domain Description: YkfC Location: 3036035-3036224 bp Feature: domain Description: YkfC Location: 3036035-3036224 bp Feature: domain Description: HNHc Note: nucleases Location: 3036353-3036506 bp Feature: domain Description: HNHc Note: nucleases Location: 3036353-3036506 bp Feature: gene Location: 3036635-3037279 bp Ori: AIL61917.1 Feature: domain Description: 2OG-Fe_Oxy_2 Location: 3036680-3037256 bp Feature: domain Description: 2OG-Fe_Oxy_2 Location: 3036680-3037256 bp Feature: gene Location: 3037279-3038553 bp Ori: AIL61918.1 Feature: domain Description: F_threo_transal Location: 3037348-3038488 bp Feature: domain Description: F_threo_transal Location: 3037348-3038488 bp Feature: gene Location: 3485415-3486473 bp Ori: AIL62336.1 Feature: domain Description: EmrA Location: 3485436-3486396 bp Feature: domain Description: EmrA Location: 3485436-3486396 bp Feature: gene Location: 3486483-3487511 bp Ori: AIL62337.1 Feature: domain Description: DUF2955 Location: 3486525-3486942 bp Feature: domain Description: DUF2955 Location: 3486525-3486942 bp Feature: domain Description: FUSC_2 Location: 3487059-3487449 bp Feature: domain Description: FUSC_2 Location: 3487059-3487449 bp Feature: gene Location: 3488264-3488986 bp Ori: AIL62338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3488276-3488735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3488276-3488735 bp Feature: gene Location: 3489447-3491660 bp Ori: AIL62339.1 Feature: domain Description: PinE Location: 3489498-3490044 bp Feature: domain Description: PinE Location: 3489498-3490044 bp Feature: domain Description: Zn_ribbon_recom Location: 3490443-3490605 bp Feature: domain Description: Zn_ribbon_recom Location: 3490443-3490605 bp Feature: domain Description: HTH_17 Location: 3491322-3491445 bp Feature: domain Description: HTH_1 7 Location: 3491 322-3491 445 bp Feature: domain Description: HTH_17 Location: 3491505-3491619 bp Feature: domain Description: HTH_1 7 Location: 3491 505-3491 61 9 bp Feature: gene Location: 3491630-3492271 bp Ori: AIL62340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3491987-3492239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3491 987-3492239 bp Feature: gene Location: 3493199-3494713 bp Ori: AIL62341.1 Feature: domain Description: COG4584 Location: 3493277-3494081 bp Feature: domain Description: COG4584 Location: 3493277-3494081 bp Feature: domain Description: COG4584 Location: 3494105-3494600 bp Feature: domain Description: COG4584 Location: 34941 05-3494600 bp Feature: gene Location: 3494731-3495486 bp Ori: AIL62342.1 Feature: domain Description: IstB_IS21_ATP Location: 3494803-3494887 bp Feature: domain Description: IstB_IS21 _ATP Location: 3494803-3494887 bp Feature: domain Description: IstB_IS21 Location: 3494890-3495418 bp Feature: domain Description: IstB_IS21 Location: 3494890-349541 8 bp Feature: gene Location: 5450650-5451576 bp Ori: AIL64113.1 Feature: domain Description: PilM_2 Location: 5450692-5451193 bp Feature: domain Description: PilM_2 Location: 5450692-5451 1 93 bp Feature: domain Description: PilM_2 Location: 5451247-5451556 bp Feature: domain Description: PilM_2 Location: 5451 247-5451 556 bp Feature: gene Location: 5451929-5452063 bp Feature: gene Location: 5452906-5454612 bp Ori: AIL64115.1 Feature: domain Description: RVT_N Location: 5452963-5453206 bp Feature: domain Description: RVT_N Location: 5452963-5453206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5453251-5453887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5453251 -5453887 bp Feature: domain Description: YkfC Location: 5454085-5454190 bp Feature: domain Description: YkfC Location: 5454085-54541 90 bp Feature: domain Description: HNHc Note: nucleases Location: 5454400-5454556 bp Feature: domain Description: HNHc Note: nucleases Location: 5454400-5454556 bp Feature: gene Location: 5454666-5457194 bp Ori: AIL64116.1 Feature: domain Description: MrcA Location: 5454750-5457138 bp Feature: domain Description: MrcA Location: 5454750-54571 38 bp Feature: gene Location: 5457374-5458642 bp Ori: AIL64117.1 Feature: domain Description: PRK07232 Location: 5457383-5458592 bp Feature: domain Description: PRK07232 Location: 5457383-5458592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), HNH_3 (pfam13392), RVT-G2L4
RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), cobalto_cobN (TIGR02257), CobW (TIGR02475), 2OG-Fe_Oxy_2 (pfam10014), F_threo_transal (TIGR04506), EmrA (COG1566), DUF2955 (pfam11168), FUSC_2 (pfam13515)
PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), PilM_2 (pfam11104), MrcA (COG5009), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed)