myRT

myRT report for GCA_000755805.1_ASM75580v1

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Seq: CP007785.1 Burkholderia cepacia strain DDS 7H-2 chromosome 3, complete sequence (1180302 bp)
Overview 1 RT 1: 227169-232518 bp Neighborhood of RT #1 [227169, 232541] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 227169-227924 bp Ori: AIO43512.1 Gene: hutC Feature: domain Description: his_ut_repres Location: 227247-227919 bp Feature: domain Description: his_ut_repres Location: 227247-22791 9 bp Feature: gene Location: 228159-228731 bp Ori: AIO43004.1 Feature: domain Description: FIN Location: 228345-228696 bp Feature: domain Description: FIN Location: 228345-228696 bp Feature: gene Location: 228985-230334 bp Ori: AIO43818.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229450-230086 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 229450-230086 bp Feature: gene Location: 230660-230989 bp Ori: AIO43634.1 Feature: domain Description: Histone_HNS Location: 230681-230918 bp Feature: domain Description: Histone_HNS Location: 230681 -23091 8 bp Feature: gene Location: 231345-232541 bp Ori: AIO43066.1 Feature: domain Description: MFS_MucK Location: 231384-232518 bp Feature: domain Description: MFS_MucK Location: 231 384-23251 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CP007787.1 Burkholderia cepacia strain DDS 7H-2 chromosome 1, complete sequence (3760231 bp)
Overview 1 RT 1: 1307134-1313808 bp 2 RT 2: 1675293-1680431 bp Neighborhood of RT #1 [1307134, 1313813] PRK09054 RpiR RVT-GII GIIM COG1981 proA Neighborhood of RT #2 [1675293, 1680499] PRK14673 RsmI RVT-GII GIIM RlpA YcbL-like_MBL-fold Feature: gene Location: 1307134-1308990 bp Ori: AIO46991.1 Gene: edd Feature: domain Description: PRK09054 Location: 1307146-1308949 bp Feature: domain Description: PRK09054 Location: 1307146-1308949 bp Feature: gene Location: 1309285-1310133 bp Ori: AIO47639.1 Feature: domain Description: RpiR Location: 1309288-1310110 bp Feature: domain Description: RpiR Location: 13092 88-1310110 bp Feature: gene Location: 1310243-1311532 bp Ori: AIO47842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1310498-1311113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1310498-1311113 bp Feature: domain Description: GIIM Note: maturase Location: 1311173-1311374 bp Feature: domain Description: GIIM Note: maturase Location: 1311173-1311374 bp Feature: gene Location: 1312096-1312512 bp Ori: AIO48644.1 Feature: domain Description: COG1981 Location: 1312099-1312510 bp Feature: domain Description: COG1981 Location: 1312 099-1312 510 bp Feature: gene Location: 1312542-1313813 bp Ori: AIO47551.1 Gene: proA Feature: domain Description: proA Location: 1312554-1313808 bp Feature: domain Description: proA Location: 1312 554-1313808 bp Feature: gene Location: 1675293-1675721 bp Ori: AIO48441.1 Feature: domain Description: PRK14673 Location: 1675296-1675713 bp Feature: domain Description: PRK14673 Location: 16752 96-1675713 bp Feature: gene Location: 1675768-1676655 bp Ori: AIO48857.1 Feature: domain Description: RsmI Location: 1675816-1676629 bp Feature: domain Description: RsmI Location: 1675816-167662 9 bp Feature: gene Location: 1676763-1678052 bp Ori: AIO48041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1677018-1677633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1677018-1677633 bp Feature: domain Description: GIIM Note: maturase Location: 1677693-1677894 bp Feature: domain Description: GIIM Note: maturase Location: 1677693-1677894 bp Feature: gene Location: 1678588-1679199 bp Ori: AIO47800.1 Gene: rlpA Feature: domain Description: RlpA Location: 1678660-1679164 bp Feature: domain Description: RlpA Location: 1678660-1679164 bp Feature: gene Location: 1679855-1680499 bp Ori: AIO49078.1 Feature: domain Description: YcbL-like_MBL-fold Location: 1679867-1680431 bp Feature: domain Description: YcbL-like_MBL-fold Location: 1679867-1680431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737), RVT-GII, GIIM (pfam08388), COG1981 (Uncharacterized membrane protein ), proA (TIGR00407), PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RlpA (COG0797), YcbL-like_MBL-fold (cd07737)

Seq: CP007786.1 Burkholderia cepacia strain DDS 7H-2 chromosome 2, complete sequence (3206581 bp)
Overview 1 RT 1: 133742-140678 bp 2 RT 2: 618899-621575 bp 3 RT 3: 649795-656675 bp 4 RT 4: 2187674-2195461 bp Neighborhood of RT #1 [133742, 140758] FUSC RVT-GII GIIM IS285 DmpA Neighborhood of RT #2 [618899, 621575] Avd_like RVT-DGRs Neighborhood of RT #3 [649795, 656731] Gmd GDP_MD_SDR_e RVT-GII GIIM PRK08133 PRK09246 Neighborhood of RT #4 [2187674, 2195508] ALDH_F7_AASADH RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 133742-135925 bp Ori: AIO46057.1 Feature: domain Description: FUSC Location: 133859-135908 bp Feature: domain Description: FUSC Location: 13 3 859-13 5908 bp Feature: gene Location: 136062-136274 bp Feature: gene Location: 136891-138150 bp Ori: AIO45525.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137146-137761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 7146-13 7761 bp Feature: domain Description: GIIM Note: maturase Location: 137821-138022 bp Feature: domain Description: GIIM Note: maturase Location: 13 7821-13 8022 bp Feature: gene Location: 138169-139443 bp Ori: AIO46741.1 Feature: domain Description: IS285 Location: 138247-139429 bp Feature: domain Description: IS285 Location: 13 8247-13 9429 bp Feature: gene Location: 139649-140758 bp Ori: AIO44170.1 Feature: domain Description: DmpA Location: 139679-140678 bp Feature: domain Description: DmpA Location: 13 9679-140678 bp Feature: gene Location: 618899-619363 bp Feature: gene Location: 619378-619767 bp Ori: AIO45366.1 Feature: domain Description: Avd_like Location: 619405-619711 bp Feature: domain Description: Avd_like Location: 619405-619711 bp Feature: gene Location: 620237-621094 bp Ori: AIO44325.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 620240-620951 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 620240-620951 bp Feature: gene Location: 621103-621342 bp Feature: gene Location: 621339-621575 bp Feature: gene Location: 649795-650841 bp Ori: AIO46719.1 Gene: gmd Feature: domain Description: Gmd Location: 649810-650827 bp Feature: domain Description: Gmd Location: 649810-650827 bp Feature: gene Location: 650828-651793 bp Ori: AIO44797.1 Feature: domain Description: GDP_MD_SDR_e Location: 650864-651761 bp Feature: domain Description: GDP_MD_SDR_e Location: 650864-651761 bp Feature: gene Location: 651913-653202 bp Ori: AIO45519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652168-652783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652168-652783 bp Feature: domain Description: GIIM Note: maturase Location: 652843-653044 bp Feature: domain Description: GIIM Note: maturase Location: 652843 -653 044 bp Feature: gene Location: 653749-654939 bp Ori: AIO44229.1 Gene: metZ Feature: domain Description: PRK08133 Location: 653755-654934 bp Feature: domain Description: PRK0813 3 Location: 653 755-65493 4 bp Feature: gene Location: 655199-656731 bp Ori: AIO46829.1 Gene: purF Feature: domain Description: PRK09246 Location: 655202-656675 bp Feature: domain Description: PRK09246 Location: 655202-656675 bp Feature: gene Location: 2187674-2189185 bp Ori: AIO45428.1 Feature: domain Description: ALDH_F7_AASADH Location: 2187728-2189144 bp Feature: domain Description: ALDH_F7_AASADH Location: 2187728-2189144 bp Feature: gene Location: 2189137-2189280 bp Feature: gene Location: 2189746-2191035 bp Ori: AIO46268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190001-2190616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190001-2190616 bp Feature: domain Description: GIIM Note: maturase Location: 2190676-2190877 bp Feature: domain Description: GIIM Note: maturase Location: 2190676-2190877 bp Feature: gene Location: 2191179-2193641 bp Ori: AIO46327.1 Feature: domain Description: MscK Location: 2191257-2193600 bp Feature: domain Description: MscK Location: 2191257-2193 600 bp Feature: gene Location: 2194090-2195508 bp Ori: AIO44398.1 Feature: domain Description: MFS_SV2_like Location: 2194210-2195461 bp Feature: domain Description: MFS_SV2_like Location: 2194210-2195461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FUSC (pfam04632), RVT-GII, GIIM (pfam08388), IS285 (COG3328), DmpA (COG3191), Avd_like (cd16376), RVT-DGRs, Gmd (COG1089), GDP_MD_SDR_e (cd05260), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)
PRK09246 (amidophosphoribosyltransferase; Provisional), ALDH_F7_AASADH (cd07130), MscK (COG3264), MFS_SV2_like (cd17316)