myRT

myRT report for GCA_000756045.1_ASM75604v1

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Seq: CP008760.1 Paraburkholderia xenovorans LB400 chromosome 1, complete sequence (4868129 bp)
Overview 1 RT 1: 349919-353818 bp 2 RT 2: 3658535-3663201 bp 3 RT 3: 4078631-4083944 bp Neighborhood of RT #1 [349919, 353883] LT_VirB1_like RVT-GII GIIM Phage_AlpA Neighborhood of RT #2 [3658535, 3663201] PAPS_reductase RVT-GII GIIM DUF3085 Neighborhood of RT #3 [4078631, 4083964] NlpB YycJ-like_MBL-fold RVT-GII GIIM YccA_like ndk Feature: gene Location: 349919-350572 bp Ori: AIP33324.1 Feature: domain Description: LT_VirB1_like Location: 349946-350381 bp Feature: domain Description: LT_VirB1 _like Location: 349946-350381 bp Feature: gene Location: 350572-351090 bp Feature: gene Location: 351354-352721 bp Ori: AIP33285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351687-352302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 687-352302 bp Feature: domain Description: GIIM Note: maturase Location: 352362-352563 bp Feature: domain Description: GIIM Note: maturase Location: 352362-352563 bp Feature: gene Location: 353376-353654 bp Feature: gene Location: 353647-353883 bp Ori: AIP31536.1 Feature: domain Description: Phage_AlpA Location: 353680-353818 bp Feature: domain Description: Phage_AlpA Location: 353680-35381 8 bp Feature: gene Location: 3658535-3659044 bp Feature: gene Location: 3659050-3659892 bp Ori: AIP33512.1 Feature: domain Description: PAPS_reductase Location: 3659083-3659632 bp Feature: domain Description: PAPS_reductase Location: 3659083-3659632 bp Feature: gene Location: 3660077-3661444 bp Ori: AIP30278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660410-3661025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366041 0-3661 025 bp Feature: domain Description: GIIM Note: maturase Location: 3661082-3661286 bp Feature: domain Description: GIIM Note: maturase Location: 3661 082-3661 286 bp Feature: gene Location: 3661892-3662245 bp Ori: AIP32832.1 Feature: domain Description: DUF3085 Location: 3661958-3662225 bp Feature: domain Description: DUF3085 Location: 3661 958-3662225 bp Feature: gene Location: 3662389-3663201 bp Feature: gene Location: 4078631-4079770 bp Ori: AIP31368.1 Feature: domain Description: NlpB Location: 4078673-4079768 bp Feature: domain Description: NlpB Location: 4078673-4079768 bp Feature: gene Location: 4079778-4080551 bp Ori: AIP31818.1 Feature: domain Description: YycJ-like_MBL-fold Location: 4079793-4080354 bp Feature: domain Description: YycJ-like_MBL-fold Location: 4079793-4080354 bp Feature: gene Location: 4081059-4082426 bp Ori: AIP30664.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081392-4082007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4081 392-4082007 bp Feature: domain Description: GIIM Note: maturase Location: 4082067-4082265 bp Feature: domain Description: GIIM Note: maturase Location: 4082067-4082265 bp Feature: gene Location: 4082551-4083249 bp Ori: AIP33427.1 Feature: domain Description: YccA_like Location: 4082608-4083235 bp Feature: domain Description: YccA_like Location: 4082608-4083235 bp Feature: gene Location: 4083539-4083964 bp Ori: AIP33118.1 Feature: domain Description: ndk Location: 4083548-4083944 bp Feature: domain Description: ndk Location: 4083548-4083944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LT_VirB1_like, RVT-GII, GIIM (pfam08388), Phage_AlpA (pfam05930), PAPS_reductase (TIGR02057), DUF3085 (pfam11284), NlpB (COG3317), YycJ-like_MBL-fold (cd07733), YccA_like (cd10433), ndk (PRK00668)

Seq: CP008762.1 Paraburkholderia xenovorans LB400 chromosome 2, complete sequence (3363006 bp)
Overview 1 RT 1: 3287689-3293490 bp Neighborhood of RT #1 [3287689, 3293561] IclR Acetyltransf_3 RVT-UG17 SLATT_5 PAP2_3 Feature: gene Location: 3287689-3288438 bp Ori: AIP35608.1 Feature: domain Description: IclR Location: 3287716-3288430 bp Feature: domain Description: IclR Location: 32 87716-32 88430 bp Feature: gene Location: 3289038-3289382 bp Ori: AIP36927.1 Feature: domain Description: Acetyltransf_3 Location: 3289074-3289377 bp Feature: domain Description: Acetyltransf_3 Location: 32 89074-32 89377 bp Feature: gene Location: 3290032-3291429 bp Ori: AIP38057.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3290263-3290863 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 32 902 63-32 90863 bp Feature: gene Location: 3291431-3292060 bp Ori: AIP36917.1 Feature: domain Description: SLATT_5 Location: 3291473-3292043 bp Feature: domain Description: SLATT_5 Location: 32 91473-32 92 043 bp Feature: gene Location: 3292614-3293561 bp Ori: AIP37365.1 Feature: domain Description: PAP2_3 Location: 3292947-3293490 bp Feature: domain Description: PAP2 _3 Location: 32 92 947-32 93490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IclR (pfam01614), Acetyltransf_3 (pfam13302), RVT-UG17, SLATT_5 (pfam18160), PAP2_3 (pfam14378)