myRT

myRT report for GCA_000756065.1_ASM75606v1

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Seq: CP008784.1 Burkholderia pseudomallei MSHR5855 chromosome 1, complete sequence (4060827 bp)
Overview 1 RT 1: 3763675-3769041 bp Neighborhood of RT #1 [3763675, 3769058] RVT-Retrons AAA_21 AAA_21 PinE Feature: gene Location: 3763675-3763833 bp Feature: gene Location: 3764155-3764931 bp Feature: gene Location: 3765780-3766748 bp Ori: AIP22974.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3765909-3766467 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3765909-3766467 bp Feature: gene Location: 3766745-3768088 bp Ori: AIP22658.1 Feature: domain Description: AAA_21 Location: 3766826-3766976 bp Feature: domain Description: AAA_21 Location: 3766826-3766976 bp Feature: domain Description: AAA_21 Location: 3767318-3767489 bp Feature: domain Description: AAA_21 Location: 376731 8-3767489 bp Feature: gene Location: 3768483-3769058 bp Ori: AIP21627.1 Feature: domain Description: PinE Location: 3768492-3769041 bp Feature: domain Description: PinE Location: 3768492-3769041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AAA_21 (pfam13304), PinE (COG1961)

Seq: CP008783.1 Burkholderia pseudomallei MSHR5855 chromosome 2, complete sequence (3236977 bp)
Overview 1 RT 1: 175005-181301 bp 2 RT 2: 222915-229172 bp Neighborhood of RT #1 [175005, 181333] Alginate_lyase Alginate_lyase DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [222915, 229204] rve_3 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 rve TnpB_IS66 Feature: gene Location: 175005-176522 bp Ori: AIP19772.1 Feature: domain Description: Alginate_lyase Location: 175563-175974 bp Feature: domain Description: Alginate_lyase Location: 175563-175974 bp Feature: domain Description: Alginate_lyase Location: 176163-176319 bp Feature: domain Description: Alginate_lyase Location: 176163-176319 bp Feature: gene Location: 177538-178461 bp Ori: AIP19104.1 Feature: domain Description: DDE_Tnp_IS66 Location: 177541-178324 bp Feature: domain Description: DDE_Tnp_IS66 Location: 177541-17832 4 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 178345-178456 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 178345-178456 bp Feature: gene Location: 178519-179781 bp Ori: AIP20369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178723-179380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17872 3-179380 bp Feature: domain Description: GIIM Note: maturase Location: 179458-179674 bp Feature: domain Description: GIIM Note: maturase Location: 179458-179674 bp Feature: gene Location: 180299-180934 bp Ori: AIP19257.1 Feature: domain Description: COG3436 Location: 180608-180911 bp Feature: domain Description: COG3436 Location: 180608-180911 bp Feature: gene Location: 180998-181333 bp Ori: AIP20071.1 Feature: domain Description: TnpB_IS66 Location: 181016-181301 bp Feature: domain Description: TnpB_IS66 Location: 181016-181301 bp Feature: gene Location: 222915-223262 bp Ori: AIP17915.1 Feature: domain Description: rve_3 Location: 222996-223191 bp Feature: domain Description: rve_3 Location: 2 2 2 996-2 2 3191 bp Feature: gene Location: 224254-225195 bp Ori: AIP18983.1 Feature: domain Description: DDE_Tnp_IS66 Location: 224257-225040 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 42 57-2 2 5040 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 225061-225172 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 2 5061-2 2 5172 bp Feature: gene Location: 225253-226515 bp Ori: AIP18831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225457-226114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 5457-2 2 6114 bp Feature: domain Description: GIIM Note: maturase Location: 226192-226408 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 6192 -2 2 6408 bp Feature: gene Location: 227033-227668 bp Ori: AIP19914.1 Feature: domain Description: COG3436 Location: 227342-227645 bp Feature: domain Description: COG3436 Location: 2 2 7342 -2 2 7645 bp Feature: gene Location: 227732-229204 bp Ori: AIP18650.1 Feature: domain Description: rve Location: 228122-228500 bp Feature: domain Description: rve Location: 2 2 812 2 -2 2 8500 bp Feature: domain Description: TnpB_IS66 Location: 228980-229172 bp Feature: domain Description: TnpB_IS66 Location: 2 2 8980-2 2 9172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), rve_3 (pfam13683), rve (pfam00665)