myRT

myRT report for GCA_000756435.3_ASM75643v3

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Seq: CP012413.1 Piscirickettsia salmonis strain PM15972A1, complete genome (3062470 bp)
Overview 1 RT 1: 874229-876902 bp 2 RT 2: 1093188-1096156 bp 3 RT 3: 1767889-1772378 bp 4 RT 4: 1899150-1904223 bp 5 RT 5: 2023831-2028406 bp Neighborhood of RT #1 [874229, 876902] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1093188, 1096164] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 InsE Neighborhood of RT #3 [1767889, 1772378] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #4 [1899150, 1904252] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII Y2_Tnp MFS_DtpA_like Neighborhood of RT #5 [2023831, 2028408] HATPase_c_2 Zn_Tnp_IS91 RVT-GII MDR_like_2 MoxR Feature: gene Location: 874229-874678 bp Ori: ALA24362.1 Feature: domain Description: DDE_3 Location: 874241-874601 bp Feature: domain Description: DDE_3 Location: 874241 -874601 bp Feature: gene Location: 874750-875115 bp Ori: ALA24363.1 Feature: domain Description: HTH_Tnp_IS630 Location: 874765-875104 bp Feature: domain Description: HTH_Tnp_IS630 Location: 874765-8751 04 bp Feature: gene Location: 875233-875835 bp Ori: ALA24364.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875239-875431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875239-875431 bp Feature: gene Location: 875891-876289 bp Ori: ALA24365.1 Feature: domain Description: Zn_Tnp_IS91 Location: 875903-876134 bp Feature: domain Description: Zn_Tnp_IS91 Location: 875903-8761 34 bp Feature: gene Location: 876375-876902 bp Feature: gene Location: 1093188-1093553 bp Ori: ALA24574.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1093203-1093542 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 093203-1 093542 bp Feature: gene Location: 1093575-1093904 bp Ori: ALA24575.1 Feature: domain Description: Y2_Tnp Location: 1093662-1093809 bp Feature: domain Description: Y2_Tnp Location: 1 093662-1 093809 bp Feature: gene Location: 1094313-1095002 bp Ori: ALA24576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094595-1094988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 094595-1 094988 bp Feature: gene Location: 1095011-1095823 bp Ori: ALA24577.1 Feature: domain Description: PHA02517 Location: 1095026-1095809 bp Feature: domain Description: PHA0251 7 Location: 1 095026-1 095809 bp Feature: gene Location: 1095871-1096164 bp Ori: ALA24578.1 Feature: domain Description: InsE Location: 1095877-1096156 bp Feature: domain Description: InsE Location: 1 095877-1 0961 56 bp Feature: gene Location: 1767889-1768446 bp Feature: gene Location: 1768635-1769033 bp Ori: ALA25243.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1768647-1768878 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 768647-1 768878 bp Feature: gene Location: 1769089-1770456 bp Ori: ALA25244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769371-1770052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769371 -1 770052 bp Feature: gene Location: 1770865-1771680 bp Ori: ALA25245.1 Feature: domain Description: Y2_Tnp Location: 1770952-1771453 bp Feature: domain Description: Y2_Tnp Location: 1 770952-1 771 453 bp Feature: gene Location: 1771842-1772378 bp Feature: gene Location: 1899150-1899812 bp Ori: ALA25368.1 Feature: domain Description: beta_CA_cladeB Location: 1899198-1899774 bp Feature: domain Description: beta_CA_cladeB Location: 1 8991 98-1 899774 bp Feature: gene Location: 1900334-1900834 bp Ori: ALA25369.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1900406-1900679 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 900406-1 900679 bp Feature: gene Location: 1900890-1902260 bp Ori: ALA25370.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901172-1901853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 901 1 72-1 901 853 bp Feature: gene Location: 1902669-1903484 bp Ori: ALA25371.1 Feature: domain Description: Y2_Tnp Location: 1902756-1903254 bp Feature: domain Description: Y2_Tnp Location: 1 902756-1 903254 bp Feature: gene Location: 1903710-1904252 bp Ori: ALA25372.1 Feature: domain Description: MFS_DtpA_like Location: 1903734-1904223 bp Feature: domain Description: MFS_DtpA_like Location: 1 903734-1 904223 bp Feature: gene Location: 2023831-2024151 bp Ori: ALA25493.1 Feature: domain Description: HATPase_c_2 Location: 2023855-2024134 bp Feature: domain Description: HATPase_c_2 Location: 2023855-20241 34 bp Feature: gene Location: 2024248-2024748 bp Ori: ALA25494.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2024320-2024593 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2024320-2024593 bp Feature: gene Location: 2024804-2025535 bp Ori: ALA25495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024810-2025128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202481 0-20251 28 bp Feature: gene Location: 2026243-2027205 bp Ori: ALA25496.1 Feature: domain Description: MDR_like_2 Location: 2026246-2027185 bp Feature: domain Description: MDR_like_2 Location: 2026246-20271 85 bp Feature: gene Location: 2027413-2028408 bp Ori: ALA25497.1 Feature: domain Description: MoxR Location: 2027464-2028406 bp Feature: domain Description: MoxR Location: 2027464-2028406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), beta_CA_cladeB (cd00884), MFS_DtpA_like (cd17346), HATPase_c_2 (pfam13581)
MDR_like_2 (cd05289), MoxR (COG0714)