myRT

myRT report for GCA_000758685.1_ASM75868v1

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Seq: CP009286.1 Paenibacillus stellifer strain DSM 14472, complete genome (5658798 bp)
Overview 1 RT 1: 18178-22334 bp 2 RT 2: 1705688-1712785 bp 3 RT 3: 3530715-3533636 bp 4 RT 4: 3915880-3921387 bp 5 RT 5: 4395052-4401315 bp 6 RT 6: 4472914-4476234 bp 7 RT 7: 4546329-4552318 bp 8 RT 8: 4559801-4566426 bp 9 RT 9: 5523737-5528835 bp Neighborhood of RT #1 [18178, 22360] RVT-GII GIIM Gin Neighborhood of RT #2 [1705688, 1712802] COG4185 YczE RVT-GII GIIM CAD1 GATase1_ThuA GATase1_ThuA Neighborhood of RT #3 [3530715, 3533812] ProX_deacylase His_kinase RVT-GII GIIM Neighborhood of RT #4 [3915880, 3921387] YcjR RVT-GII GIIM YolD Neighborhood of RT #5 [4395052, 4401315] CsgD RVT-GII RVT-GII GIIM Neighborhood of RT #6 [4472914, 4476308] WcaA WcaA RVT-GII GIIM Neighborhood of RT #7 [4546329, 4552318] RVT-Retrons Neighborhood of RT #8 [4559801, 4566449] OmpR UbiE RVT-GII GIIM APH_ChoK_like MhpC Neighborhood of RT #9 [5523737, 5528846] Glyco_hydro_26 RVT-GII GIIM PRK03830 Feature: gene Location: 18178-18759 bp Feature: gene Location: 18756-19535 bp Feature: gene Location: 19990-21390 bp Ori: AIQ61762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20302-20929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20302-20929 bp Feature: domain Description: GIIM Note: maturase Location: 20986-21214 bp Feature: domain Description: GIIM Note: maturase Location: 20986-21 21 4 bp Feature: gene Location: 21477-21998 bp Feature: gene Location: 22169-22360 bp Ori: AIQ61764.1 Feature: domain Description: Gin Location: 22202-22334 bp Feature: domain Description: Gin Location: 22202-22334 bp Feature: gene Location: 1705688-1706272 bp Ori: AIQ63061.1 Feature: domain Description: COG4185 Location: 1705709-1706255 bp Feature: domain Description: COG41 85 Location: 1 705709-1 706255 bp Feature: gene Location: 1706851-1707510 bp Ori: AIQ63062.1 Feature: domain Description: YczE Location: 1706890-1707445 bp Feature: domain Description: YczE Location: 1 706890-1 707445 bp Feature: gene Location: 1709201-1710601 bp Ori: AIQ63063.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1709513-1710140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70951 3-1 71 01 40 bp Feature: domain Description: GIIM Note: maturase Location: 1710197-1710425 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 01 97-1 71 0425 bp Feature: gene Location: 1711229-1712278 bp Ori: AIQ63064.1 Feature: domain Description: CAD1 Location: 1711253-1712255 bp Feature: domain Description: CAD1 Location: 1 71 1 253-1 71 2255 bp Feature: gene Location: 1712512-1712802 bp Ori: AIQ63065.1 Feature: domain Description: GATase1_ThuA Location: 1712569-1712692 bp Feature: domain Description: GATase1 _ThuA Location: 1 71 2569-1 71 2692 bp Feature: domain Description: GATase1_ThuA Location: 1712695-1712785 bp Feature: domain Description: GATase1 _ThuA Location: 1 71 2695-1 71 2785 bp Feature: gene Location: 3530715-3531221 bp Ori: AIQ64549.1 Feature: domain Description: ProX_deacylase Location: 3530727-3531171 bp Feature: domain Description: ProX_deacylase Location: 3530727-3531 1 71 bp Feature: gene Location: 3531493-3532044 bp Ori: AIQ64550.1 Feature: domain Description: His_kinase Location: 3531817-3531928 bp Feature: domain Description: His_kinase Location: 3531 81 7-3531 928 bp Feature: gene Location: 3532412-3533812 bp Ori: AIQ64551.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3532724-3533351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3532724-3533351 bp Feature: domain Description: GIIM Note: maturase Location: 3533408-3533636 bp Feature: domain Description: GIIM Note: maturase Location: 3533408-3533636 bp Feature: gene Location: 3915880-3916188 bp Feature: gene Location: 3916605-3917432 bp Ori: AIQ64880.1 Feature: domain Description: YcjR Location: 3916641-3917418 bp Feature: domain Description: YcjR Location: 391 6641 -391 741 8 bp Feature: gene Location: 3917631-3919031 bp Ori: AIQ64881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3917943-3918570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 7943-391 8570 bp Feature: domain Description: GIIM Note: maturase Location: 3918627-3918855 bp Feature: domain Description: GIIM Note: maturase Location: 391 8627-391 8855 bp Feature: gene Location: 3920190-3920525 bp Ori: AIQ64882.1 Feature: domain Description: YolD Location: 3920241-3920517 bp Feature: domain Description: YolD Location: 3920241 -392051 7 bp Feature: gene Location: 3920863-3921387 bp Feature: gene Location: 4395052-4395300 bp Feature: gene Location: 4395490-4395714 bp Ori: AIQ65238.1 Feature: domain Description: CsgD Location: 4395514-4395700 bp Feature: domain Description: CsgD Location: 439551 4-4395700 bp Feature: gene Location: 4396537-4397859 bp Ori: AIQ65239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4396792-4397485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4396792-4397485 bp Feature: gene Location: 4398442-4399674 bp Ori: AIQ65240.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398625-4399243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4398625-4399243 bp Feature: domain Description: GIIM Note: maturase Location: 4399294-4399507 bp Feature: domain Description: GIIM Note: maturase Location: 4399294-4399507 bp Feature: gene Location: 4399958-4400539 bp Feature: gene Location: 4400536-4401315 bp Feature: gene Location: 4472914-4473660 bp Ori: AIQ65300.1 Feature: domain Description: WcaA Location: 4472917-4473217 bp Feature: domain Description: WcaA Location: 447291 7-447321 7 bp Feature: gene Location: 4473907-4474659 bp Ori: AIQ65301.1 Feature: domain Description: WcaA Location: 4473937-4474267 bp Feature: domain Description: WcaA Location: 4473937-4474267 bp Feature: gene Location: 4475142-4476308 bp Ori: AIQ65302.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4475364-4475985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4475364-4475985 bp Feature: domain Description: GIIM Note: maturase Location: 4476024-4476234 bp Feature: domain Description: GIIM Note: maturase Location: 4476024-4476234 bp Feature: gene Location: 4546329-4547105 bp Feature: gene Location: 4548077-4549099 bp Ori: AIQ65348.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4548299-4548854 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4548299-4548854 bp Feature: gene Location: 4549258-4549590 bp Feature: gene Location: 4551329-4552318 bp Feature: gene Location: 4559801-4560496 bp Ori: AIQ65358.1 Feature: domain Description: OmpR Location: 4559816-4560491 bp Feature: domain Description: OmpR Location: 455981 6-4560491 bp Feature: gene Location: 4560886-4561692 bp Ori: AIQ65359.1 Feature: domain Description: UbiE Location: 4561222-4561558 bp Feature: domain Description: UbiE Location: 4561 222-4561 558 bp Feature: gene Location: 4562425-4563825 bp Ori: AIQ65360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562737-4563364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562737-4563364 bp Feature: domain Description: GIIM Note: maturase Location: 4563421-4563649 bp Feature: domain Description: GIIM Note: maturase Location: 4563421 -4563649 bp Feature: gene Location: 4564421-4565332 bp Ori: AIQ65361.1 Feature: domain Description: APH_ChoK_like Location: 4564508-4565081 bp Feature: domain Description: APH_ChoK_like Location: 4564508-4565081 bp Feature: gene Location: 4565568-4566449 bp Ori: AIQ65362.1 Feature: domain Description: MhpC Location: 4565694-4566426 bp Feature: domain Description: MhpC Location: 4565694-4566426 bp Feature: gene Location: 5523737-5524363 bp Feature: gene Location: 5525515-5526492 bp Ori: AIQ66101.1 Feature: domain Description: Glyco_hydro_26 Location: 5525551-5526472 bp Feature: domain Description: Glyco_hydro_26 Location: 5525551 -5526472 bp Feature: gene Location: 5526576-5527976 bp Ori: AIQ66102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5526888-5527515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5526888-552751 5 bp Feature: domain Description: GIIM Note: maturase Location: 5527572-5527800 bp Feature: domain Description: GIIM Note: maturase Location: 5527572-5527800 bp Feature: gene Location: 5528622-5528846 bp Ori: AIQ66103.1 Feature: domain Description: PRK03830 Location: 5528625-5528835 bp Feature: domain Description: PRK03830 Location: 5528625-5528835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Gin (pfam10764), COG4185 (Predicted ABC-type ATPase ), YczE (COG2364), CAD1 (cd05283), GATase1_ThuA (cd03142), ProX_deacylase (cd04333), His_kinase (pfam06580), YcjR (COG1082)
YolD (pfam08863), CsgD (COG2771), WcaA (TIGR04017), RVT-Retrons, OmpR (COG0745), UbiE (COG2226), APH_ChoK_like (cd05120), MhpC (COG0596), Glyco_hydro_26 (pfam02156), PRK03830 (small acid-soluble spore protein Tlp; Provisional)